This hands-on workshop will provide an introduction to RNA-Seq analysis using the library-licensed CLC Genomics Workbench. Participants will learn how to (1) import reads from an NCBI GEO dataset (GSE52778), (2) align RNA-Seq data to a reference genome, (3) calculate known genes and transcript expressions, (4) perform differential expression analysis, and (5) discover novel exons.

Please register for CLC Genomics Workbench, Biomedical Genomics Workbench and Correlation Engine.

You must also sign up for a Center for Research Computing HPC allocation.


Upcoming classes


October 11, 2017 - 1:00pm to 4:00pm
Instructor: Ansuman Chattopadhyay
Location: Falk Library, Classroom 2
December 6, 2017 - 1:00pm to 4:00pm
Instructor: Ansuman Chattopadhyay
Location: Falk Library, Classroom 2