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GeneSpring GX, from Agilent, is a visualization and analysis software designed for use with expression data. Highlights include:
- Guidance for most common tasks
- Project-based hierarchical data organization
- Advanced Statistical Tools
- Pattern Recognition
- Class Prediction
- Biological relevance, Gene ontology, and Gene Set Enrichment Analysis (GSEA)
Software Access
Please register to receive download instructions for Windows or Mac OS X. Usage is limited to on-campus network computers.
Noteworthy Features
- GeneSpring GX lets you analyze data from a wide variety of vendors, such as Agilent, Affymetrix and Illumina expression analysis systems, or choose a simple wizard that can import all types of expression data.
- Programmers can make use of the documented Jython scripting language to extend GeneSpring GX's functionality. The scripting enables incorporation of third-party applications such as BioConductor, SAS, MATLABŪ and R algorithms.
- GeneSpring GX's world class classification algorithms, which include SVM, neural networks and Bayesian statistics, use training set data to find clinically predictive expression patterns and help you determine which genes are of greatest predictive value.
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