|
URL:
|
http://darwin.nmsu.edu/cgi-bin/blast_filter.cgi
|
|
What you can do:
|
Build and analyze sets of related DNA and protein sequences.
|
|
Highlights:
|
- BLAST Filter generates related sequence sets in an automated, objective and reproducible way based on an input query sequence. Sequences matched by BLAST are filtered through a set of 15 user-configurable rules based on full-length query/subject comparisons, high-scoring segment pair statistics and the level of redundancy in the sequence set. Such sets can be used for multiple alignments, profile hidden Markov models and other bioinformatics applications.
- GraphAlign (http://darwin.nmsu.edu/cgi-bin/graph_align.cgi) provides several novel methods for analyzing global query/subject alignments along with graphical representations of sequence similarities.
- They can be used separately or together.
|
|
Keywords:
|
- sequence alignment tool
- multiple sequence alignment tool
- sequence blast
|
|
Literature and Tutorials:
|
PubMed Link: Blast Filter and GraphAlign
|
