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4DXpress -- expression database in four dimensions
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| A database for cross-species expression pattern comparisons.
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5'SAGE -- 5'-end Serial Analysis of Gene Expression database
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| Search for information on observed frequencies of individual 5' end SAGE tags and previously unknown transcription start sites in the promoter regions, introns and intergenic regions of known genes in human genome.
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Allen Brain Atlas -- A Genome-wide atlas of gene expression in the adult mouse brain
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| Access interactive, genome-wide image database of gene expression in the mouse brain.
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ArrayExpress -- A public repository for microarray gene expression data at the EBI
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| Submit or search annotated microarray data.
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Axeldb -- a Xenopus laevis database focusing on gene expression
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| Search integrated gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos.
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BGED -- Brain Gene Expression Database
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| Search for gene expression data for various physiological and pathological processes in mouse brain.
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BarleyBase -- an expression profiling database for plant genomics
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| Analyze and visualize plant microarray data. |
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BloodExpress -- a database of gene expression in mouse haematopoiesis
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| A database of gene expression in mouse haematopoiesis.
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BodyMap incorporated PCR-based expression profiling data and a gene ranking system
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| Search for gene expression data in human and mouse tissues and cells.
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BodyMap-Xs -- anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
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| Conduct cross-species gene expression comparison.
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CAGE Basic/Analysis Databases -- the CAGE resource for comprehensive promoter analysis
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| Search for comprehensive Cap-analysis gene expression (CAGE) Basic data and Analysis results.
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CIDB -- Chlamydia Interactive Database -- Gene expression data
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| Search for gene expression data for under various environmental conditions.
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CleanEx -- A Database of Heterogeneous Gene Expression Data Based on A Consistent Gene Nomenclature
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| Retrieve public gene expression data via unique gene names.
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DAVID -- A Database for Annotation, Visualization and Integrated Discovery
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| Conduct comprehensive gene annotation, expression data analysis, biological pathway mapping, and other functional genomics tasks. |
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DRASTIC—INSIGHTS -- querying information in a plant gene expression database
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| Search for information of plant gene expression in response to pathogens and environmental changes. |
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EICO -- Expression-based Imprint Candidate Organizer
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| Find disease-related imprinted genes.
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EMAGE -- Edinburgh Mouse Atlas of Gene Expression
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| Search for in situ gene expression patterns in the developing mouse embryo.
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EPConDB -- Endocrine pancreas consortium database
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| Search for information on genes expressed in pancreas.
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EpoDB -- a database for the analysis of genes expressed during vertebrate erythropoiesis
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| Search for information on genes expressed in vertebrate red blood cells.
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GENSTAT -- Gene expression nervous system atlas: a map of gene expression in the central nervous system of the mouse
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| Search gene expression atlas of the central nervous system in the mouse.
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GEOmetadb -- GEO Microarray Search Tool
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| A powerful alternative search engine for the Gene Expression Omnibus.
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GPX -- Macrophage Expression Atlas
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| Search for gene expression data based studies of a range of macrophage cell types following treatment with pathogens and immune modulators.
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GXD -- the Mouse Gene Expression Database
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| Search for gene expression information in the laboratory mouse.
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Gene Aging Nexus -- a web database and data mining platform for microarray data on aging
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| Search and analyze microarray data on aging in different model organisms.
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Gene expression in dental tissue
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| Search for information on gene expression in tooth.
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GeneNote -- a database of gene expression in normal adult human tissues
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| Search for gene expression profiles in healthy human tissues.
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GenePaint.org -- An Atlas of Gene Expression Patterns in the Mouse Embryo
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| Search for gene expression patterns in 100 different mouse embryonic tissues.
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GeneTide -- a new transcriptome focused member of the GeneCards/GeneNote suite of databases
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| Search for annotated information on human transcripts (mRNA & ESTs).
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GermOnline -- A Cross-species Community Knowledgebase on Germ Cell Differentiation
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| Search for information and microarray expression data for genes involved in mitosis and meiosis, gamete formation and germ line development across species.
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GermSAGE -- a SAGE database for transcript discovery on male germ cell development
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| A collection of male germ cell transcriptiome information derived from Serial Analysis of Gene Expression.
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H-ANGLE -- The Human Anatomic Gene Expression Library -- the H-Inv integrative display of human gene expression across disparate technologies and platforms
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| Search for information concerning the anatomical distribution and expression of human gene transcripts.
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Hembase -- Browser and Genome Portal for Hematology and Erythroid Biology
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| Browse and examine the human erythroid transcriptome.
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HugeIndex -- a database with visualization tools for high-density oligonucleotide array data from normal human tissues
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| Search for global gene expression data on normal human tissues obtained high-density oligonucleotide arrays.
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ITTACA -- a new database for integrated tumor transcriptome array and clinical data analysis
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| Search the integrated gene expression and clinical data of various cancers. |
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LOLA -- List of lists annotated: a comparison of gene sets identified in different microarray experiments
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| Compare gene lists from different different microarray studies or other genomic expression profiling.
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MAGEST -- Maboya Gene Expression patterns and Sequence Tags
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| Search for the maternal gene expression information for an ascidian, Halocynthia roretzi.
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MEPD -- Medaka Expression Pattern Database
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| Search for gene expression data in medaka.
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MethDB -- A public database for DNA methylation data
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| Search for DNA methylation data.
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MethyCancer -- the database of human DNA methylation and cancer
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| Locate highly integrated data of DNA methylation, cancer-related gene, mutation and cancer information from public resources, & CpG Island clones derived from large-scale sequencing.
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NASCArrays -- A Repository for Arabidopsis Microarray Data
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| Search for microarray data of Arabidopsis.
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NCBI GEO -- Gene Expression Omnibus
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| Search the largest public repository for high-throughput gene expression data.
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Novartis Gene Expression Database
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| Search for gene expression profiles of human and mouse tissues with over 30000 targets.
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OncoMine -- Cancer microarray data by gene or cancer type
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| Search for cancer gene expression microarray data. |
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Osteo-Promoter Database (OPD) -- promoter analysis in skeletal cells
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| Search for information on gene expressed in skeletal cells and their promoter sequences.
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Plant MPSS databases -- signature-based transcriptional resources for analyses of mRNA and small RNA
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| Search for gene expression data in model plants generated by MPSS (massively parallel signature sequencing) technology. |
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PubMeth -- a cancer methylation database combining text-mining and expert annotation
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| Search an annotated and reviewed database of methylation in cancer.
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READ -- RIKEN Expression Array Database
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| Search for expression profile data from the RIKEN mouse cDNA microarray.
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RECODE 2003 -- The database of the translational recoding events
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| Search for translational recoding events (programmed ribosomal frameshifting, codon redefinition and translational bypass).
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RefExA -- Reference database for human gene expression analysis
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| Search and compare gene expression in different human tissues.
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SAGEmap
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| Find gene expression information of a nucleotide sequence.
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SIEGE -- Smoking Induced Epithelial Gene Expression Database
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| Search and analyze gene expression data from epithelial cells of the human intra-thoracic airway affected by smoking.
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SMD -- The Stanford Microarray Database
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| Store, annotate, view, analyze, and share microarray data.
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SOL -- Selection of OLigonucleotides
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| Check probes with every new database release.
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SOURCE -- A unified genomic resource of functional annotations, ontologies, and gene expression data
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| Search for information on the genetics and molecular biology of genes from the genomes of Homo sapiens, Mus musculus, Rattus norvegicus. |
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TMAD -- The Stanford Tissue Microarray Database
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| Find annotated tissue images and associated expression data.
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The Center for Modeling Human Disease Gene Trap resource
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| Search for insertions in genes (Gene trap mutagenesis) expressed in mouse embryonic stem cells, under specific in vitro conditions, or based upon sequence identity via an online searchable database. |
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The Connectivity Map -- Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease
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| Use gene expression profiles to discover functional connections among diseases, genetic perturbation, and drug action.
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The International Gene Trap Consortium Website -- a portal to all publicly available gene trap cell lines in mouse
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| Search for all publicly available gene trap lines in mouse.
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The Mouse SAGE Site -- Database of Public Mouse SAGE Libraries
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| Search for qualitative and quantitative expression data of mouse generated by SAGE technique.
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The PEPR GeneChip Data Warehouse
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| Search for expression profile data containing over one thousand Canis domestica, Homo sapiens, Mus musculus and Rattus norvegicus Affymetrix GeneChip expression profiles.
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The PhenoGen informatics website -- tools for analyses of complex traits
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| A comprehensive toolbox for storing, analyzing and integrating microarray data and related genotype and phenotype data.
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The UniTrap resource -- tools for the biologist enabling optimized use of gene trap clones
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| A comprehensive resource devoted to biologists wanting to optimize the use of gene trap clones in their experiments.
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The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
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| Access and analyze gene expression information derived from the human and murine prostate.
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TiGER -- Tissue-specific Gene Expression and Regulation
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| A database of tissue-specific gene regulation in human tissues.
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TmaDB -- Tissue microarray database
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| Search for tissue microarray data.
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YMD -- a microarray database for large-scale gene expression analysis.
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| Retrieve and analyze microarray images and accompanying analysis data from hundreds of different investigators.
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Yeast Deletion Project and Proteomics of Mitochondria Database
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| Search for data from the Yeast Deletion, Mitochondrial Proteomics, and Yeast Expression Projects. |
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dbERGE II -- Database of Experimental Results on Gene Expression
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| Search for experimental data and results from gene expression studies using a variety of functional assays.
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dbEST-- database for "expressed sequence tags".
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| Search Expressed Sequence Tags database
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emap Atlas Edinburgh mouse atlas -- a digital atlas of mouse embryo development and spatially-mapped gene expression
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| Visualize gene expression data mapped to 3D structure of mouse embryos.
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rOGED -- Rat ovarian gene expression database
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| Search for genome-wide rat ovarian gene expression data.
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