Microarray design, probes

OBRC

	GeneAnnot -- A database of annotated Affymetrix probe sets.
	Get annotated Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0.

	NetAffx -- Affymetrix probesets and annotations
	Search for details of annotated probesets on Affymetrix GeneChip microarrays.

	OligoWiz 2.0 — integrating sequence feature annotation into the design of microarray probes
	Perform intelligent design of oligonucleotides for DNA microarrays.

	PRIMEGENS -- robust and efficient design of gene-specific probes for microarray analysis
	Select gene-specific fragments and then design PCR primer pairs to amplify fragments suitable for microarray probes.

	PUNS -- transcriptomic- and genomic-in silico PCR for enhanced primer design
	Design PCR primers with high specificity.

	PhylArray -- phylogenetic probe design algorithm for microarray
	A program for designing oligonucleotide probes (from 16S rRNA) for use in phylogenetic microarray experiments.

	ProbeLynx -- A tool for updating the association of microarray probes to genes
	Assess microarray probe specificity and annotation based on latest releases of genomic sequence data and gene prediction.

	Probewiz
	Design PCR primers for amplifying probes for cDNA arrays, with the goal of reducing or eliminating cross-hybridizations.

	SNPbox -- Web-based High-throughput Primer Design from Gene to Genome
	Automatically design PCR primers for large-scale amplification and sequencing projects aimed at constructing single nucleotide polymorphisms (SNPs) maps.

	probeBase -- An online resource for rRNA-targeted oligonucleotide probes
	Search for published rRNA-targeted oligonucleotide probe sequences.

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