|
ABCdb -- Archaeal and Bacterial ABC transporter database
|
| Search for comprehensive information on ATP-binding cassette (ABC) transporters in archaeal and bacterial genomes.
|
| |
|
|
ATDB -- Animal Toxin DataBase
|
| Find chemical structures and annotation data of all animal toxins.
|
| |
|
|
AssociationDB -- web-based exploration of genomic association
|
| Explore genome-wide association studies.
|
| |
|
|
BNDb -- Biomolecules Nucleus Database
|
| An integrated proteomics and transcriptomics database.
|
| |
|
|
CARGO -- A web portal to integrate customized biological information
|
| A open platform system that aims to facilitate the analysis of biological data, including visualization, mapping, and literature retrieval.
|
| |
|
|
CEBS -- Chemical Effects in Biological Systems
|
| Public repository for toxicogenomics data.
|
| |
|
|
CORG -- A database for COmparative Regulatory Genomics
|
| Delineate conserved non-coding blocks from upstream regions of putative orthologous gene pairs from man, mouse, rat, fugu, Mus musculus, Danio rerio, and zebrafish.
|
| |
|
|
CoGenT++ -- an extensive and extensible data environment for computational genomics
|
| Conduct computational research in comparative and functional genomics.
|
| |
|
|
Comparative Genometrics (CG) -- a database dedicated to biometric comparisons of whole genomes
|
| Conduct comparative biometric analysis of chromosomes of different organisms.
|
| |
|
|
DEG -- A Database of Essential Genes
|
| Find out if a gene is essential to life.
|
| |
|
|
DNAlive -- a tool for the physical analysis of DNA at the genomic scale
|
| A tool for the analysis and graphical display of structural and physical characteristics of genomic DNA.
|
| |
|
|
EGO -- Eukaryotic Gene Orthologs
|
| Search for orthologous genes in eukaryotes.
|
| |
|
|
EGassembler -- online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments
|
| Align and merge sequence fragments resulting from shotgun sequencing or gene transcripts (EST) fragments in order to reconstruct the original segment or gene.
|
| |
|
|
EMGlib - Enhanced Microbial Genomes Library
|
| Search for annotated genomic information of completed prokaryotes genomes.
|
| |
|
|
Entrez Genome
|
| Search for genomic sequences from completely sequenced organisms and those for which sequencing is in progress.
|
| |
|
|
EuMicroSatdb -- Eukaryotic MicroSatellite database
|
| A database for microsatellites in the sequenced genomes of eukaryotes.
|
| |
|
|
FGF -- Fishing Gene Family
|
| Find gene families and plot phylogenetic trees.
|
| |
|
|
FusionDB -- A Database for In-depth Analysis of Prokaryotic Gene Fusion Events
|
| Analyze prokaryotic gene fusion events.
|
| |
|
|
GENOMEPOP -- a program to simulate genomes in populations
|
| Software that allows the forward simulation of DNA sequences in a metapopulation context under a variety of conditions.
|
| |
|
|
GMDD -- GMO Detection method Database
|
| A database of genetically modified organism detection methods.
|
| |
|
|
Genome Information Broker (GIB) -- data retrieval and comparative analysis system for completed microbial genomes and more
|
| Conduct comparative genomics studies using extensive collection of microbial genomes and Arabidopsis genome.
|
| |
|
|
Genome Information Broker for Viruses (GIB-V) -- database for comparative analysis of virus genomes
|
| Search for information on virus genomes/segments from this comprehensive database. |
| |
|
|
Genomes OnLine Database (GOLD) -- genomic and metagenomic projects and their associated metadata
|
| Access information regarding complete and ongoing genome and metagenome projects around the world.
|
| |
|
|
Genomes at the EBI
|
| Search for EBI’s collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes.
|
| |
|
|
HGT-DB -- A database of putative horizontally transferred genes in prokaryotic complete genomes
|
| Search prokaryotic genomes for putative horizontally transferred genes.
|
| |
|
|
ICDS database -- interrupted CoDing sequences in prokaryotic genomes
|
| Search for interrupted coding sequence detected in 116 complete prokaryotic genomes.
|
| |
|
|
IMG/M -- Integrated Microbial Genomes/Metagenomes
|
| A data management and analysis system for metagenomes
|
| |
|
|
Integr8 and Genome Reviews -- integrated views of complete genomes and proteomes
|
| Explore the biology of organisms with completely deciphered genomes and proteomes.
|
| |
|
|
Integrated microbial genomes (IMG) system
|
| Search and analyze microbial genomes from a comprehensive database by the DOE-Joint Genome Institute (JGI).
|
| |
|
|
Invertebrate Homologous Genes Database
|
| Search for information on homologous invertebrate genes.
|
| |
|
|
KEGG -- resource for deciphering the genome
|
| Search a database of biological systems that integrates genomic, chemical and systemic functional information.
|
| |
|
|
KaryotypeDB -- Karyotype and chromosome data for animal and plant species
|
| Search for Karyotype and chromosome data for animal and plant species.
|
| |
|
|
MBGD -- Microbial genome database for comparative analysis
|
| Conduct comparative analysis of completely sequenced microbial genomes.
|
| |
|
|
NCBI Genomic Biology
|
| Provides several genomic biology tools and resources, including organism-specific pages that include links to many web sites and databases relevant to that species
|
| |
|
|
ODB -- a database of operons accumulating known operons across multiple genomes
|
| Search for information on operons in prokaryotic genomes.
|
| |
|
|
OriDB -- a DNA replication origin database
|
| Search for both confirmed and predicted S.cerevisiae DNA replication origin sites.
|
| |
|
|
OrthoDB -- the hierarchical catalog of eukaryotic orthologs
|
| Find groups of orthologous genes.
|
| |
|
|
OrthoMCL-DB -- querying a comprehensive multi-species collection of ortholog groups
|
| Search for predicted ortholog group from 55 species.
|
| |
|
|
PACRAT -- A database and analysis system for archaeal and bacterial intergenic sequence features
|
| Search and analyze intergenic sequences in archaeal and bacterial genomes.
|
| |
|
|
PEDANT genome database -- Protein Extraction, Description and ANalysis Tool
|
| Conduct genome wide functional and structural analysis.
|
| |
|
|
PUMA2 — grid-based high-throughput analysis of genomes and metabolic pathways
|
| Carry out high-throughput genetic sequence analysis and metabolic reconstructions from sequence data.
|
| |
|
|
PartiGeneDB — collating partial eukaryotic genomes
|
| Search for gene information from species-specific and non-redundant partial eukaryotic genomes.
|
| |
|
|
PhylomeDB -- a database for genome-wide collections of gene phylogenies
|
| Database of complete phylomes derived for different genomes within a specific taxonomic range.
|
| |
|
|
Pseudogene.org -- a comprehensive database and comparison platform for pseudogene annotation
|
| Search for annotated information on pseudogene from a comprehensive collection.
|
| |
|
|
SIDDBASE -- a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes
|
| Evaluate stress-induced DNA duplex destabilization (SIDD)in prokaryotic genomes.
|
| |
|
|
THOR -- targeted high-throughput ortholog reconstructor
|
| Designed to assemble target genomic sequence orthologs in low-coverage genomes.
|
| |
|
|
TIGR (The Institute for Genomic Research) Microbial Database
|
| Retrieve genetic information of published microbial genomes and chromosomes and those in progress
|
| |
|
|
The COG database -- phylogenetic classification of proteins from complete genomes
|
| Search information on phylogenetic classification of proteins encoded in complete genomes of different organisms.
|
| |
|
|
The Comprehensive Microbial Resource (CMR)
|
| Search for genomic information on all of the publicly available, complete prokaryotic genomes.
|
| |
|
|
The European Bioinformatics Institute's data resources -- towards systems biology
|
| Search and use an extensive collection to molecular biology database and tools. |
| |
|
|
The Macaque Genome: Interactive Poster and Teaching Resource
|
| An interactive online poster presentation on the Macaque genome, including high-quality images, video clips, and Web resources |
| |
|
|
The National Microbial Pathogen Database Resource (NMPDR) -- a genomics platform based on subsystem annotation
|
| Search for annotated genomic information on pathogenic bacteria. |
| |
|
|
The Plant DNA C-values Database
|
| Search for information on plant DNA C-values and genome sizes. |
| |
|
|
The animal genome size database
|
| Search for information on animal haploid DNA C-values and genome sizes.
|
| |
|
|
The web server of IBM's Bioinformatics and Pattern Discovery group
|
| Access to a large number of software tools for various bioinformatics tasks. |
| |
|
|
TransportDB -- A Relational Database of Cellular Membrane Transport Systems
|
| Predict cellular membrane transport proteins in organisms whose complete genome sequences are available.
|
| |
|
|
TreeBASE -- A database of phylogenetic knowledge
|
| Search for phylogenetic trees and the data matrices used to generate them from published research papers.
|
| |
|
|
VMD -- a community annotation database for oomycetes and microbial genomes
|
| Search for microbial genomic sequences and annotation data.
|
| |
|
|
Visualization for genomics -- the Microbial Genome Viewer.
|
| Interactively visualize microbial genomes and generate high-quality scalable images. |
| |
|
|
dbGap -- a Database of Genome Wide Association Studies
|
| Search for data from wide association (GWA) studies.
|
| |
|
|
eggNOG -- evolutionary genealogy of genes: Non-supervised Orthologous Groups
|
| Discover orthologous groups of genes.
|
| |
|
|
euGenes -- a Eukaryota genome information system
|
| Search for common summary of eukaryotic genes and genomes.
|
| |
|
|
the Fungal Genome Size Database
|
| Search for information on fungal haploid DNA C-values and genome sizes.
|
| |
