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ABCdb -- Archaeal and Bacterial ABC transporter database
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| Search for comprehensive information on ATP-binding cassette (ABC) transporters in archaeal and bacterial genomes.
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ATDB -- Animal Toxin DataBase
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| Find chemical structures and annotation data of all animal toxins.
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AssociationDB -- web-based exploration of genomic association
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| Explore genome-wide association studies.
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BNDb -- Biomolecules Nucleus Database
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| An integrated proteomics and transcriptomics database.
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CARGO -- A web portal to integrate customized biological information
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| A open platform system that aims to facilitate the analysis of biological data, including visualization, mapping, and literature retrieval.
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CEBS -- Chemical Effects in Biological Systems
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| Public repository for toxicogenomics data.
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CORG -- A database for COmparative Regulatory Genomics
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| Delineate conserved non-coding blocks from upstream regions of putative orthologous gene pairs from man, mouse, rat, fugu, Mus musculus, Danio rerio, and zebrafish.
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CoGenT++ -- an extensive and extensible data environment for computational genomics
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| Conduct computational research in comparative and functional genomics.
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Comparative Genometrics (CG) -- a database dedicated to biometric comparisons of whole genomes
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| Conduct comparative biometric analysis of chromosomes of different organisms.
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DEG -- A Database of Essential Genes
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| Find information about genes essential to life in prokaryotes and eukaryotes.
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DNAlive -- a tool for the physical analysis of DNA at the genomic scale
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| A tool for the analysis and graphical display of structural and physical characteristics of genomic DNA.
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EGO -- Eukaryotic Gene Orthologs
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| Search for orthologous genes in eukaryotes.
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EGassembler -- online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments
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| Align and merge sequence fragments resulting from shotgun sequencing or gene transcripts (EST) fragments in order to reconstruct the original segment or gene.
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EMGlib - Enhanced Microbial Genomes Library
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| Search for annotated genomic information of completed prokaryotes genomes.
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Entrez Genome
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| Search for genomic sequences from completely sequenced organisms and those for which sequencing is in progress.
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EuMicroSatdb -- Eukaryotic MicroSatellite database
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| A database for microsatellites in the sequenced genomes of eukaryotes.
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FGF -- Fishing Gene Family
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| Find gene families and plot phylogenetic trees.
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FusionDB -- A Database for In-depth Analysis of Prokaryotic Gene Fusion Events
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| Analyze prokaryotic gene fusion events.
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GENOMEPOP -- a program to simulate genomes in populations
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| Software that allows the forward simulation of DNA sequences in a metapopulation context under a variety of conditions.
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GMDD -- GMO Detection method Database
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| A database of genetically modified organism detection methods.
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Genome Information Broker (GIB) -- data retrieval and comparative analysis system for completed microbial genomes and more
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| Conduct comparative genomics studies using extensive collection of microbial genomes and Arabidopsis genome.
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Genome Information Broker for Viruses (GIB-V) -- database for comparative analysis of virus genomes
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| Search for information on virus genomes/segments from this comprehensive database. |
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GenomeVx -- circular chromosome visualization
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| Simple web-based creation of editable circular chromosome maps.
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Genomes OnLine Database (GOLD) -- genomic and metagenomic projects and their associated metadata
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| Access information regarding complete and ongoing genome and metagenome projects around the world.
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Genomes at the EBI
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| Search for EBI’s collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes.
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HGT-DB -- A database of putative horizontally transferred genes in prokaryotic complete genomes
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| Search prokaryotic genomes for putative horizontally transferred genes.
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ICDS database -- interrupted CoDing sequences in prokaryotic genomes
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| Search for interrupted coding sequence detected in 116 complete prokaryotic genomes.
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IMG/M -- Integrated Microbial Genomes/Metagenomes
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| A data management and analysis system for metagenomes
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Idiographica -- a general-purpose web application to build idiograms on-demand for human, mouse and rat.
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| A web server for you to create your own idiogram.
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Integr8 and Genome Reviews -- integrated views of complete genomes and proteomes
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| Explore the biology of organisms with completely deciphered genomes and proteomes.
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Integrated microbial genomes (IMG) system
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| Search and analyze microbial genomes from a comprehensive database by the DOE-Joint Genome Institute (JGI).
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Invertebrate Homologous Genes Database
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| Search for information on homologous invertebrate genes.
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Jenti -- an efficient tool for mining complex inbred genealogies
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| A tool to mine the pairwise kinship coefficient matrix of complex genealogies with multiple lines of descent and identify clusters of individuals sharing the same expected amount of relatedness through maximum-clique approach.
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KEGG -- resource for deciphering the genome
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| Search a database of biological systems that integrates genomic, chemical and systemic functional information.
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KaryotypeDB -- Karyotype and chromosome data for animal and plant species
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| Search for Karyotype and chromosome data for animal and plant species.
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MBGD -- Microbial genome database for comparative analysis
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| Conduct comparative analysis of completely sequenced microbial genomes.
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MetaLook -- a 3D visualisation software for marine ecological genomics
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| For visualisation and analysis of marine ecological genomic and metagenomic data with respect to habitat parameters.
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NCBI Genomic Biology
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| Provides several genomic biology tools and resources, including organism-specific pages that include links to many web sites and databases relevant to that species
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ODB -- a database of operons accumulating known operons across multiple genomes
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| Search for information on operons in prokaryotic genomes.
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OriDB -- a DNA replication origin database
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| Search for both confirmed and predicted S.cerevisiae DNA replication origin sites.
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OrthoDB -- the hierarchical catalog of eukaryotic orthologs
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| Find groups of orthologous genes.
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OrthoMCL-DB -- querying a comprehensive multi-species collection of ortholog groups
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| Search for predicted ortholog group from 55 species.
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PACRAT -- A database and analysis system for archaeal and bacterial intergenic sequence features
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| Search and analyze intergenic sequences in archaeal and bacterial genomes.
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PEDANT -- Protein Extraction, Description and ANalysis Tool
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| Conduct genome wide functional and structural analysis.
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PGMapper -- a web-based tool linking phenotype to genes
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| A software tool for automatically matching phenotype to genes from a defined genome region or a group of given genes.
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PHIDIAS -- a pathogen-host interaction data integration and analysis system
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| Information related to pathogen-host interactions.
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PUMA2 — grid-based high-throughput analysis of genomes and metabolic pathways
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| Carry out high-throughput genetic sequence analysis and metabolic reconstructions from sequence data.
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PartiGeneDB — collating partial eukaryotic genomes
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| Search for gene information from species-specific and non-redundant partial eukaryotic genomes.
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PhylomeDB -- a database for genome-wide collections of gene phylogenies
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| Database of complete phylomes derived for different genomes within a specific taxonomic range.
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Pseudogene.org -- a comprehensive database and comparison platform for pseudogene annotation
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| Search for annotated information on pseudogene from a comprehensive collection.
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SIDDBASE -- a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes
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| Evaluate stress-induced DNA duplex destabilization (SIDD)in prokaryotic genomes.
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THOR -- targeted high-throughput ortholog reconstructor
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| Designed to assemble target genomic sequence orthologs in low-coverage genomes.
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TIGR (The Institute for Genomic Research) Microbial Database
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| Retrieve genetic information of published microbial genomes and chromosomes and those in progress
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The COG database -- phylogenetic classification of proteins from complete genomes
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| Search information on phylogenetic classification of proteins encoded in complete genomes of different organisms.
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The Comprehensive Microbial Resource (CMR)
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| Search for genomic information on all of the publicly available, complete prokaryotic genomes.
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The European Bioinformatics Institute's data resources -- towards systems biology
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| Search and use an extensive collection to molecular biology database and tools. |
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The Macaque Genome: Interactive Poster and Teaching Resource
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| An interactive online poster presentation on the Macaque genome, including high-quality images, video clips, and Web resources |
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The National Microbial Pathogen Database Resource (NMPDR) -- a genomics platform based on subsystem annotation
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| Search for annotated genomic information on pathogenic bacteria. |
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The Plant DNA C-values Database
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| Search for information on plant DNA C-values and genome sizes. |
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The animal genome size database
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| Search for information on animal haploid DNA C-values and genome sizes.
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The web server of IBM's Bioinformatics and Pattern Discovery group
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| Access to a large number of software tools for various bioinformatics tasks. |
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TransportDB -- A Relational Database of Cellular Membrane Transport Systems
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| Predict cellular membrane transport proteins in organisms whose complete genome sequences are available.
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TreeBASE -- A database of phylogenetic knowledge
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| Search for phylogenetic trees and the data matrices used to generate them from published research papers.
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VMD -- a community annotation database for oomycetes and microbial genomes
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| Search for microbial genomic sequences and annotation data.
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Visualization for genomics -- the Microbial Genome Viewer.
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| Interactively visualize microbial genomes and generate high-quality scalable images. |
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dbGap -- a Database of Genome Wide Association Studies
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| Search for data from wide association (GWA) studies.
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eggNOG -- evolutionary genealogy of genes: Non-supervised Orthologous Groups
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| Discover orthologous groups of genes.
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euGenes -- a Eukaryota genome information system
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| Search for common summary of eukaryotic genes and genomes.
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the Fungal Genome Size Database
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| Search for information on fungal haploid DNA C-values and genome sizes.
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