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Automated Gene Ontology annotation for anonymous sequence data
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| Perform automated annotation based on GO terms for anonymous cDNA or protein sequences.
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Blast2GO -- a universal tool for annotation, visualization and analysis in functional genomics research
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| Perform Gene Ontology (GO) based data mining and visualization on sequence data for which no GO annotation is yet available.
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DAVID -- A Database for Annotation, Visualization and Integrated Discovery
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| Conduct comprehensive gene annotation, expression data analysis, biological pathway mapping, and other functional genomics tasks. |
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ECgene -- Genome annotation for alternative splicing
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| Search for annotated information about gene structure, function and expression, and alternative splicing events. |
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Evigan -- an automated gene annotation program for eukaryotic genomes
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| A hidden variable model for integrating gene evidence for eukaryotic gene prediction.
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FunSimMat -- a comprehensive functional similarity database
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| Database that provides several different semantic similarity measures for GO terms.
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GALA -- the database of Genome ALignments and Annotations
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| Search annotated sequence alignment from interlinked relational databases for five vertebrate species, human, chimpanzee, mouse, rat and chicken. |
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GO -- the Gene Ontology Database
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| Search structured, controlled vocabularies for community use in annotating genes, gene products and sequences.
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GO PaD -- the Gene Ontology Partition Database
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| Search for gene ontology partitioned based on an informational theoretic approach that maximize information for gene enrichment/analysis.
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GOA -- The Gene Ontology Annotation Database
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| Search gene informations annotated based on the standardized vocabularies of Gene Ontology.
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GOblet -- A Platform for Gene Ontology Annotation of Anonymous Sequence Data
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| Annotate anonymous sequence data with Gene Ontology (GO) terms.
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GOfetcher -- A Database with Complex Searching Facility for Gene Ontology
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| Gene Ontology information extractor.
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Genew -- the Human Gene Nomenclature Database
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| Search data for all human genes that have approved symbols.
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HCGene -- Hierarchical Classification of Genes
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| A software tool to support the hierarchical classification of genes.
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HGNC Database -- HUGO Gene Nomenclature
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| Search approved symbols for human genes.
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ICB database -- the gyrB database for identification and classification of bacteria
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| Search for information about the DNA gyrase subunit B (gyrB) gene in bacteria.
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IUBMB Nomenclature database
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| Search for nomenclature of enzymes, membrane transporters, electron transport proteins and other proteins
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IUPAC Nomenclature database
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| Search for Nomenclature of biochemical and organic compounds approved by the IUBMB-IUPAC Joint Commission.
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OBO-Edit -- an ontology editor for biologists
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| An open source, platform-independent ontology editor.
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OGtree -- a tool for creating genome trees of prokaryotes based on overlapping genes
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| A web-based tool for constructing genome trees of prokaryotic species based on a measure of combining overlapping-gene content and overlapping-gene order in their whole genomes.
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PANDIT -- an evolution-centric database of protein and associated nucleotide domains with inferred trees
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| Search for multiple sequence alignments and phylogenetic trees covering many common protein domains.
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PANTHER -- A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
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| Browse and search proteins based on their biological functions.
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Projector 2 -- contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
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| Automatically position contigs from an unfinished prokaryotic genome onto (parts of) a template genome of a closely related strain or species in order to close a significant number of remaining gaps in the late stages of a genome sequencing project.
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RIDOM -- Ribosomal Differentiation of Medical Micro-organisms Database
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| Differentiate medical microorganisms based on partial small subunit ribosomal DNA (16S rDNA) sequence.
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SerbGO -- searching for the best GO tool
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| Compare the capabilities of different programs.
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Signature -- a web server for taxonomic characterization of sequence samples using signature genes
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| Web server that identifies the signature genes in a set of query sequences, and therewith phylogenetically characterizes it.
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SuperPred -- target-prediction server
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| Drug classification and target prediction.
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The NCBI Taxonomy Homepage
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| Search for comprehensive taxonomy information of all organisms represented in GenBank.
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The Ontology Lookup Service -- more data and better tools for controlled vocabulary queries
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| Provides interactive and programmatic interfaces to query, browse and navigate an ever increasing number of biomedical ontologies and controlled vocabularies.
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The Ribosomal Database Project (RDP-II) -- An annotated rRNA database
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| Search for sequence and other information on ribosomal RNA.
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The web server of IBM's Bioinformatics and Pattern Discovery group
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| Access to a large number of software tools for various bioinformatics tasks. |
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Tree of Life
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| Search for comprehensive information on phylogeny and biodiversity.
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UMLS -- The Unified Medical Language System
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| Search for standardized biomedical vocabularies, concepts, and their relationships.
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WEGO -- a web tool for plotting GO annotations
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| Plot gene ontology annotations onto a histogram graph.
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the official database of the IUPHAR Committee on Receptor Nomenclature and Drug Classification
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| Search for International Union of Pharmacology recommendations on receptor nomenclature and drug classification.
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