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Biobanks -- transnational, European and global networks
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| A key resource in unravelling the association between disease subtypes and small, but systematic, variations in genotype, phenotype, and lifestyle.
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CREME -- Cis-Regulatory Module Explorer for the Human Genome
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| Identify and visualize cis-regulatory modules in the promoter regions of a given set of potentially co-regulated genes in human genome. |
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Database of Genomic Variants
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| Find a comprehensive summary of structural variation in the human genome.
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Ensembl
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| Find genome annotation, databases and other information for chordate and selected model organism and disease vector genomes. |
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Evola -- human orthologs as evolutionary annotation
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| Database of evolutionary features of human genes.
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GDB -- the Human Genome DataBase
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| Search the encyclopedia of the human genome that is being constantly revised and updated to reflect the current state of scientific knowledge.
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GenAtlas
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| Retrieve comprehensive genetic, phenotypic, and pathological information about human genome and proteome.
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GenMapDB -- a database of mapped human BAC clones
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| Search for information on mapped human bacterial artificial chromosome (BAC) clones.
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GeneCards
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| Find concise information about the functions of all human genes.
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GeneLoc -- exon-based integration of human genome maps
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| Search for meaningful location-based identifier to each gene in human genome.
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GeneLynx -- Human, Mouse, rat genome portal
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| Retrieve information for human, mouse or rat genomes. |
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H-DBAS -- Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
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| Search for annotated information on alternatively spliced human transcripts. |
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H-InvDB -- Human Invitational Database
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| Search for annotated information on human genes and transcripts.
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HMDB -- the Human Metabolome Database
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| Search for comprehensive information on human metabolism and metabolite.
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HOMD -- the Human Oral Microbiome Database
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| Search detailed biological entries on oral microorganisms and the genes they express.
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HOWDY -- an integrated database system for human genome research
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| Access and analyze human genomic information.
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HUNT -- a full-length cDNA database from the Helix Research Institute
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| Search for information about human full-length cDNA sequences with annotation from sequence analysis and structure predictions. |
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Human BAC Ends
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| Search for non-redundant human BAC end sequences (BESs).
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Human Genome Segmental Duplication Database
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| Search for segmental duplications in human genome.
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Human PAML browser -- a database of positive selection on human genes using phylogenetic methods
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| Provides access to the results of tests for positive selection in 14,000 human genes.
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IXDB -- The Integrated X Chromosome Database
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| Search for comprehensive information on human X chromosome.
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IXDB, an X chromosome integrated database
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| Search for comprehensive and integrated information on human X chromosome.
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L1Base -- from functional annotation to prediction of active LINE-1 elements
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| Search for information on putatively active LINE-1 (L1) insertions residing in human and rodent genomes.
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LIFEdb -- A Database for Functional Genomics Experiments
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| Explore and visualize features of the annotated human cDNAs and ORFs combined with experimental results. |
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MGC -- MAMMALIAN GENE COLLECTION
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| Search for sequences of publicly accessible cDNA resource containing a complete open reading frame (ORF) for every human, mouse, and other model organisms' gene.
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NCBI Map Viewer -- Homo sapiens Genome
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| Get the graphical displays of features on NCBI's assembly of human genomic sequence data as well as cytogenetic, genetic, physical, and radiation hybrid maps
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ORFDB --A High-quality Open Reading Frame Collection
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| Search an evolving collection of human and mouse Open Reading Frame (ORF) clones (UltimateTM ORF Clones). |
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ParaDB -- A tool for paralogy mapping in vertebrate genomes
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| Predict and map paralogous regions in vertebrate genomes.
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QTL MatchMaker -- a multi-species quantitative trait loci (QTL) database and query system for annotation of genes and QTL
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| Identify and characterize the DNA sequences responsible for a given quantitative trait loci (QTL).
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RHdb -- the Radiation Hybrid database
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| Search for radiation hybrid data of human, mouse and rat.
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RefSeq -- a curated non-redundant sequence database of genomes, transcripts and proteins.
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| Find non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products, for major research organisms
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SKY/M-FISH and CGH Database
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| Visualize and identify chromosmal aberrations based on molecular cytogenetic data.
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SOURCE -- A unified genomic resource of functional annotations, ontologies, and gene expression data
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| Search for information on the genetics and molecular biology of genes from the genomes of Homo sapiens, Mus musculus, Rattus norvegicus. |
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STACK -- Sequence Tag Alignment and Consensus Knowledgebase
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| Detect and visualize of expressed human transcript variation in the context of developmental and pathological states.
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T2D-Db -- Type 2 diabetes Database
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| An integrated platform to study the molecular basis of Type 2 diabetes.
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TRbase -- A Database Of Tandem Repeats In The Human Genome
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| Search for Tandem Repeats In The Human Genome.
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The Chromosome 7 Annotation Project -- Human chromosome 7 sequence and annotation
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| Search for comprehensive annotated genomic information on human Chromosome 7.
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The ENCODE Project at UC Santa Cruz
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| Search for information on identified functional elements in human genome.
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The Gene Resource Locator -- gene locus maps for transcriptome analysis
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| Search for gene maps that include information on gene-expression patterns, cis-elements in regulatory regions and alternatively spliced transcripts.
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UCSC Genome Browser
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| Get a rapid and reliable display of any requested portion of genomes at any scale, together with dozens of aligned annotation tracks.
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VISTA Enhancer Browser—a database of tissue-specific human enhancers
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| Search for information on experimentally validated human noncoding fragments with gene enhancer activity as assessed in transgenic mice. |
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dbGap -- a Database of Genome Wide Association Studies
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| Search for data from wide association (GWA) studies. |
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mtDB -- Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
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| Search for comprehensive information on human mitochondrial genome. |
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