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AnimalQTLdb -- a livestock QTL database tool set for positional QTL information mining and beyond
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| Search for publicly available QTL data on livestocks and animal species.
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COXPRESdb -- a database of coexpressed gene networks in mammals
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| Find coexpressed gene lists and networks in human and mouse. |
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ChickVD -- a sequence variation database for the chicken genome
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| Search for information on non-redundant DNA sequence variants in different chicken genomes.
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Cre Transgenic Database -- Cre transgenic mouse lines with links to publications
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| Search for information Cre transgenic mouse lines.
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DBTGR -- a database of tunicate promoters and their regulatory elements
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| Search for information on tunicate promoters and regulatory elements.
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DED -- Database of Evolutionary Distances
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| Search, store and analyze evolutionary distances among homologous genes in different organisms.
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EMMA -- European Mouse Mutant Archive
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| A non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research.
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EMPReSS -- European Mouse Phenotyping Resource of Standardised Screens
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| Database of SOPs that can be used to describe the phenotype of a mouse.
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EUCOMM -- European Conditional Mouse Mutagenesis Program
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| A mouse mutant resource.
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Ensembl
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| Find genome annotation, databases and other information for chordate and selected model organism and disease vector genomes.
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EuroPhenome -- an online mouse phenotyping resource
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| Find phenome data derived from mice using the standardised tests contained in EMPReSS (the European Mouse Phenotyping Resource of Standardised Screens).
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FANTOM DB -- database of Functional Annotation of RIKEN Mouse cDNA Clones
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| Search for sequences and other functional annotation of RIKEN Mouse cDNA Clones.
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FREP -- A Database of Functional Repeats in Mouse cDNAs
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| Search for functional repeat in mouse cDNAs.
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GALA -- the database of Genome ALignments and Annotations
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| Search annotated sequence alignment from interlinked relational databases for five vertebrate species, human, chimpanzee, mouse, rat and chicken.
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Gallus GBrowse -- a unified genomic database for the chicken
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| Provides online access to genomic and other information about the chicken, Gallus gallus.
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GeneLynx -- Human, Mouse, rat genome portal
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| Retrieve information for human, mouse or rat genomes.
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HomoloGene
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| Find possible homologs for a gene present in different organisms.
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InParanoid -- eukaryotic ortholog clusters with inparalogs
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| Search for pairwise eukaryotic ortholog groups between 17 whole genomes.
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MGC -- MAMMALIAN GENE COLLECTION
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| Search for sequences of publicly accessible cDNA resource containing a complete open reading frame (ORF) for every human, mouse, and other model organisms' gene. |
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MGD -- Mouse Genome Database
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| Find genetic, genomic, and phenotypic information about the laboratory mouse.
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MPD -- the Mouse Phenome Database
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| Find phenotypic and genotypic data for the laboratory mouse. |
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MTID -- A database of Sleeping Beauty transposon insertions in mice
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| Search for random insertional mutagen available for germline genetic screens in mice.
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MUGEN mouse database--animal models of human immunological diseases
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| Find murine models of immune processes and immunological diseases.
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ORFDB --A High-quality Open Reading Frame Collection
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| Search an evolving collection of human and mouse Open Reading Frame (ORF) clones (UltimateTM ORF Clones). |
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PEDE -- Pig EST Data Explorer
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| Obtain information on sequence data and cDNA clones of pig.
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ParaDB -- A tool for paralogy mapping in vertebrate genomes
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| Predict and map paralogous regions in vertebrate genomes. |
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PigGIS -- Pig Genomic Informatics System
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| Search for annotated information on pig genome, ESTs and SNPs.
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Polymorphix -- a sequence polymorphism database
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| Search for information on within-species sequence polymorphism in the nuclear, mitochondrial and chloroplastic genomes of Eukaryota species.
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QTL MatchMaker -- a multi-species quantitative trait loci (QTL) database and query system for annotation of genes and QTL
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| Identify and characterize the DNA sequences responsible for a given quantitative trait loci (QTL). |
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RHdb -- the Radiation Hybrid database
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| Search for radiation hybrid data of human, mouse and rat. |
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Rat Genome Database (RGD) -- developments towards a phenome database
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| Retrieve curated and integrated information on rat genetic, genomic and biological data.
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RatMap -- rat genome tools and data
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| Search for information on rat genes, polymorphic rat DNA-markers and rat quantitative trait loci.
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SOURCE -- A unified genomic resource of functional annotations, ontologies, and gene expression data
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| Search for information on the genetics and molecular biology of genes from the genomes of Homo sapiens, Mus musculus, Rattus norvegicus. |
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The ARKdb -- genome databases for farmed and other animals
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| Search in this comprehensive public repositories for genome mapping data and various genetic information from farmed and other animal species.
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The Adaptive Evolution Database (TAED) -- a phylogeny based tool for comparative genomics
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| Search for information on adaptive evolution in gene families of higher plants and chordate.
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The Mouse Functional Genome Database (MfunGD) -- functional annotation of proteins in the light of their cellular context
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| Search for annotated information about mouse proteins and their occurrence in protein networks.
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TreeFam -- a curated database of phylogenetic trees of animal gene families
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| Provides curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments.
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UTGB/medaka -- University of Tokyo Genome Browser Medaka
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| Find genomic information about the freshwater fish, Medaka (Oryzias latipes).
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UniGene
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| Find mapping and expression information for a unigene cluster (ESTs and full-length mRNA sequences organized into clusters that each represent a unique known or putative gene) |
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UniSTS
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| Find genomic marker and mapping information for a nucleotide sequence.
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Vega -- The Vertebrate Genome Annotation database
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| View manual annotation of human, mouse and zebrafish genomic sequences.
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Wanda -- a database of duplicated fish genes
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| Search for information on duplicated genes in ray-finned fish (Actinopterygii).
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Xenbase -- a Xenopus biology and genomics resource
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| Find a diverse array of biological and genomic data on the frogs, Xenopus laevis and Xenopus (Silurana) tropicalis.
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ZFIN -- the Zebrafish Information Network
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| Find curated zebrafish genetic, genomic and developmental data.
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cneViewer -- Conserved Non-encoding Element Viewer
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| A Database of Conserved Noncoding Elements for Studies of Tissue-Specific Gene Regulation.
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