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URL:
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http://www.ampdb.bcs.uwa.edu.au/
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What you can do:
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Search for information on the predicted and experimentally confirmed protein complement of mitochondria from the model plant Arabidopsis thaliana.
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Highlights:
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- The database was formed using the total non-redundant nuclear and organelle encoded sets of protein sequences and allows relational searching of published proteomic analyses of Arabidopsis mitochondrial samples, a set of predictions from six independent subcellular-targeting prediction programs, and orthology predictions based on pairwise comparison of the Arabidopsis protein set with known yeast and human mitochondrial proteins and with the proteome of Rickettsia.
- A variety of precomputed physical–biochemical parameters are also searchable as well as a more detailed breakdown of mass spectral data produced from our proteomic analysis of Arabidopsis mitochondria.
- It contains hyperlinks to other Arabidopsis genomic resources (MIPS, TIGR and TAIR), which provide rapid access to changing gene models as well as hyperlinks to T-DNA insertion resources, Massively Parallel Signature Sequencing (MPSS) and Genome Tiling Array data and a variety of other Arabidopsis online resources.
- It also incorporates basic analysis tools built into the query structure such as a BLAST facility and tools for protein sequence alignments for convenient analysis of queried results.
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Keywords:
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- mitochondrial proteins
- mitochondrial proteome
- Arabidopsis thaliana
- Arabidopsis mitochondrion
- mitochondrial proteins
- protein localizations
- mitochondria
- mitochondrion
- Mitochondrial Inparanoid Orthologs
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Literature and Tutorials:
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PubMed Link: AMPDB
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This record last updated: 05-05-2005
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