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ARGH -- Biomedical Acronym Resolver
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| Identify acronyms/abbreviations and their definitions within MEDLINE records.
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ATCC -- American Type Culture Collection
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| Browse American Type Culture Collection (ATCC) catalog for cell lines, viruses, microorganisms, plants, even ESTs and yeast genetic stocks etc.
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AcroMed -- a database of biomedical acronyms
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| Search for biomedical acronyms and the associated long forms extracted from MEDLINE abstracts (2001).
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Amino Acid Table
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| Find information on the molecular properties and structure for each amino acid.
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BWS -- BIOSMILE web search
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| A web application for annotating biomedical entities and relations.
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BioLit -- integrating biological literature with databases
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| Provides metadata describing the semantic content of all open access, peer-reviewed articles which describe research from the major life sciences literature archive, PubMed Central.
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BioText Search Engine -- beyond abstract search
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| A new way to access the scientific literature.
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Biocompare -- the Buyers' Guide for Life Scientists
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| Search for buyers' guide, reviews, and user comments on various lab products for life science research.
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COPE -- Cytokines Online Pathfinder Encyclopaedia
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| Search for comprehensive information on cytokines.
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CellSpace Knowledge Miner
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| search for relationships between biomolecules and cellular functions or pathological states documented in literatures.
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CoPub -- a literature-based keyword enrichment tool for microarray data analysis
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| Uses information in the Medline database for the biological interpretation of microarray data.
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Codon Usage Database
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| Find the frequency of codon use in various organisms.
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Codon Usage Tables
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| Find the codon usage table for a particular organism using its Latin name.
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Compound Solutions
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| Get the recipes for common buffers (TE,TBE,SSC) and recalculate the recipes for a user defined volume.
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Current Comparative Table (CCT) automates customized searches of dynamic biological databases
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| Automate customized bioinformatics searches.
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Current Protocols in Bioinformatics
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| Find current protocols from CP in Bioinformatics.
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Current Protocols in Cell Biology
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| Find current protocols from CP in Cell Biology.
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Current Protocols in Cytometry
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| Search for current protocols in cytometry.
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Current Protocols in Food Analytical Chemistry
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| Search for Current Protocols in Food Analytical Chemistry.
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Current Protocols in Human Genetics
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| Find current protocols from CP in Human Genetics.
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Current Protocols in Immunology
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| Search for current protocols used in immunology research.
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Current Protocols in Magnetic Resonance Imaging
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| Search for Current Protocols in Magnetic Resonance Imaging research.
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Current Protocols in Molecular Biology (Red Book)
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| Find current protocols from CP in Molecular Biology.
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Current Protocols in Neuroscience
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| Find current protocols from CP in Neuroscience.
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Current Protocols in Nucleic Acid Chemistry
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| Find current protocols from CP in Nucleic Acid Chemistry
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Current Protocols in Pharmacology
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| Search for Current Protocols in Pharmacology.
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Current Protocols in Protein Science
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| Find protocols from CP in Protein Science.
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Current Protocols in Toxicology
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| Search for Current Protocols in Toxicology.
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DNA Size (kb) Protein Size (kDa) Conversion Tool
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| Estimate the size of the gene (kb) by the protein size (kDa) and vice versa.
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Dragon TF Association Miner -- A System for Exploring Transcription Factor Associations Through Text-mining
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| Mine PubMed documents for potential functional association of transcription factors (TFs) with terms from Gene Ontology (GO) and with diseases. |
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E3Miner -- a text mining tool for ubiquitin-protein ligases
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| Integrates available E3 data not only from the published literature but also from the biological databases, using natural language processing techniques.
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Entrez PubMed Abstract Search
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| Search PubMed to retrieve articles.
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ExactAntigen
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| Find antibody/reagent information and reviews from a database organized according to genes, species, and/or reagent types.
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Faculty of 1000
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| Find the most important papers published in various fields of life sciences, based on the recommendations of a faculty of well over 1000 selected leading researchers.
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Free tutorials sponsored by Openhelix
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| Access free online tutorials on UCSC Genome Browser and a few others.
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GoPubMed -- exploring PubMed with the Gene Ontology
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| Conduct gene ontology based search of PubMed abstracts.
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HubMed -- a web-based biomedical literature search interface
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| Conduct sophisticated PubMed biomedical literature search and management.
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Incyte Proteome BioKnowledge® Library
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| Access to six protein database for human curated literature, sequence, and genetic information.
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LitMiner and WikiGene -- identifying problem-related key players of gene regulation using publication abstracts
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| Identify problem-related key players of gene regulation using publication abstracts.
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MRS -- a fast and compact retrieval system for biological data
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| Retrieve genetic information in a large number of flat-file data banks.
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MedGene Database
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| Find and rank gene-disease relationships based on disease-gene co-citation in MEDLINE literatures.
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NLProt -- Extracting protein names and sequences from papers
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| Find protein-names and sequences in natural language-text.
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PIE -- Protein Interaction information Extraction
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| An online prediction system for protein-protein interactions from text.
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PaLS -- Pathway and Literature Strainer
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| Filter common literature, biological terms and pathway information.
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Pathguide -- a pathway resource list
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| Search for database and tools relevant to biological pathway study from this comprehensive resources list. |
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Patome -- a database server for biological sequence annotation and analysis in issued patents and published patent applications
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| Search for biological sequence data disclosed in patents and published applications, as well as their analysis information.
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Peptide sequence and literature database
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| Search for information on peptide sequence and literature. |
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PolySearch -- comprehensive biomedical text searching
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| A web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.
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Protocol Online
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| Search for protocols for molecular biology and medical research.
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PubCrawler -- An Automatic New Content Alert System for PubMed and GenBank
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| Create a personalized free automatic alert system on newly added literatures or sequences in PubMed/GenBank that are specific to customized queries.
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PubFinder -- a tool for improving retrieval rate of relevant PubMed abstracts
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| Search PubMed abstracts with improved retrieval rate.
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PubGene Literature and Sequence Network Browser
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| Find literatures or sequences associated with a given gene of human, mouse, or rat.
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PubGene Mesh Associations
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| Search for MeSH terms associations for a set of genes.
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PubMatrix -- A Tool for Multiplex Literature Mining
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| Mine PubMed Literatures for genomic and proteomic datasets.
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Random Nucleic Acid Sequence Generator and Sequence Mixer
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| Generate either mixed or random nucleotide sequence.
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Rotor Calculation
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| Convert the speed of centrifugation [krpm] in relative centrifuge force (RCF)[kg]. The radius of rotor [mm] should be known for the calculation.
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Rotor Calculation (Beckman)
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| Convert the speed of centrifugation [krpm] in relative centrifuge force (RCF)[kg} for any centrifuges made by Beckman Coulter.
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SaRAD -- A Simple and Robust Abbreviation Dictionary
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| Search for information of biomedical abbreviations in MEDLINE.
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Science STKE Literature
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| Find perspectives, reviews, protocols and journal articles focused on cell signaling.
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Search Current Protocols
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| Search for protocols within individual titles or search all available titles simultaneously.
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Search PubMed Abstracts Containing Aliases and Synonyms of Proteins
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| Search PubMed for abstracts containing all aliases and synonyms of a given, and find associated proteins.
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Standard Genetic Code
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| Consult the standard genetic code table.
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Stanford Biomedical Abbreviation Server
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| Search for longer forms of abbreviations in MEDLINE or the context in MEDLINE for biomedical abbreviations.
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Textpresso -- An Ontology-Based Information Retrieval and Extraction System for Biological Literature
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| Mine biological literatures via a very sophisticated system that goes far beyond what a simple keyword search engine can do.
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The Bioinformatics Links Directory -- a compilation of molecular biology web servers.
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| Search a directory of database and web servers previously published in Nucleic Acids Research.
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UMLS -- The Unified Medical Language System
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| Search for standardized biomedical vocabularies, concepts, and their relationships. |
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Unit Conversion Tool
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| Convert units of measurements, cm to inch, Celsius to Fahrenheit, gm to ounce, mCi to CPM etc.
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Weight to Molar Quantity (for proteins)
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| Convert the weight into the molar quantity and vice versa; calculate concentrations using weight and volume.
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Whatizit -- Text processing through Web services
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| A text processing system that allows you to do textmining tasks on text.
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WormBook -- the online review of Caenorhabditis elegans biology
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| Search for literature information on biology of Caenorhabditis elegans and related nematodes from this online collection of original, peer-reviewed chapters.
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XplorMed -- a web server for exploring scientific literature
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| Use this web tool to aid MEDLINE searching by summarizing the subjects contained in the results.
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bioProtocol
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| Search for protocols used in a wide variety of life science disciplines.
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botXminer -- mining biomedical literature with a new web-based application
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| Mine biomedical literatures in PubMed.
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e-LiSe -- e-Literature Searcher
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| An online tool for finding needles in the '(Medline) haystack'.
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eTBLAST--A web server to identify expert reviewers, appropriate journals and similar publications
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| When preparing a manucript, use this free resource to select an appropriate journal for submission, to identify potential reviewers, and to estimate the novelty of an article.
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iHOP -- Information Hyperlinked Over Proteins
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| Assess automatically retrieved literature linked to genes and proteins.
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