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AMPDB -- the Arabidopsis Mitochondrial Protein Database
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| Search for information on the predicted and experimentally confirmed protein complement of mitochondria from the model plant Arabidopsis thaliana. |
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ARAMEMNON -- A novel database for Arabidopsis integral membrane proteins
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| Search and compare predicted membrane proteins and transporters in Arabidopsis, rice, cyanobacteria, and organellar genomes.
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ARTADE -- ARabidopsis Tiling-Array-based Detection of Exons
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| Search for Arabidopsis genes predicted by analyzing genome-wide tiling-array data in Arabidopsis.
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ASRP -- the Arabidopsis Small RNA Project database
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| Search for information on Arabidopsis endogenous small RNAs - microRNAs (miRNAs) and short-interfering RNAs (siRNAs).
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ATTED-II -- a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
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| Search for information on predicted Arabidopsis thaliana trans-factor and cis-element and co-regulated gene relationships based on microarray data.
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Agris -- The Arabidopsis Gene Regulatory Information Server
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| Search for comprehensive information on Arabidopsis promoter sequences, transcription factors and their target genes.
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Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis
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| Identify co-expressed genes based on n a large Arabidopsis thaliana microarray data set.
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Arabidopsis MPSS
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| Search for gene expression data in Arabidopsis generated by MPSS (massively parallel signature sequencing) technology, as well as information on Arabidopsis small RNAs.
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AtNoPDB -- Arabidopsis nucleolar protein database
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| Search for information on 217 nucleolar proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture.
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AtPID -- Arabidopsis thaliana protein interactome database
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| An integrative platform for plant systems biology.
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AtREA -- Arabidopsis thaliana regulatory element analyzer
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| A collection of programs for analysis of distribution, features and combination of known and novel CREs (Cis-Regulatory Elements) in Arabidopsis functional classes, metabolic pathways, genome wide microarray and user defined datasets.
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AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana
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| Generate a map of cis-regulatory elements for the Arabidopsis thaliana genome.
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CATMA -- A complete Arabidopsis GST database
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| Search for information on high quality Gene-specific Sequence Tags (GSTs) covering most Arabidopsis genes.
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CATdb -- a Complete Arabidopsis Transcriptome Database
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| Search for Arabidopsis transcriptome data from the URGV-CATMA platform.
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DATF -- a database of Arabidopsis transcription factors
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| Search for information on Arabidopsis transcription factors.
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FLAGdb++ -- A Database for the Functional Analysis of the Arabidopsis Genome
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| Search and visualize data for high-throughput functional analysis of Arabidopsis, rice, and other plant genomes. |
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GABI-Kat SimpleSearch -- an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions
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| Search for information on Arabidopsis T-DNA insertion mutants.
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GeneCAT -- gene co-expression analysis toolbox
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| Novel webtools that combine BLAST and co-expression analyses.
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GeneFarm -- Structural and functional annotation of Arabidopsis gene and protein families by a network of experts
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| Search for homogeneous, reliable, documented and traceable annotations for Arabidopsis nuclear genes and gene products.
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GreenPhylDB -- a database for plant comparative genomics
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| A comprehensive platform designed to facilitate comparative functional genomics in Oryza sativa and Arabidopsis thaliana genomes.
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MAtDB -- MIPS Arabidopsis thaliana Database
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| Search genomic information and knowledge about Arabidopsis from this comprehensive resource.
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MPrIC Database -- Mitochondrial Protein Import Components
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| Search for detailed information on the protein import apparatus of plant mitochondria. |
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NASCArrays -- A Repository for Arabidopsis Microarray Data
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| Search for microarray data of Arabidopsis. |
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PathoPlant® -- a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses
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| Search for information on plant-pathogen interactions, signal transduction, and microarray gene expression during plant pathogenesis. |
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PhosPhAt -- The Arabidopsis Protein Phosphorylation Site Database
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| A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
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PlantQTL-GE -- a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information
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| Search for information of candidate genes on gene expression data and QTL results.
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RARGE -- a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
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| Search for information on Arabidopsis biological resources ranging from transcriptome to phenome.
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SUBA -- the Arabidopsis Subcellular Database
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| Search for integrated information on subcellular localization of Arabidopsis proteome.
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TAIR -- The Arabidopsis Information Resource
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| A model organism database for the fully sequenced and intensively studied model plant Arabidopsis thaliana.
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The AGNS database
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| Search for information on the available Arabidopsis morphology and development and gene expression patterns in the wild type and in different mutants and transgenic lines.
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The Arabidopsis SeedGenes Project
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| Search for molecular and phenotypic information on essential, non-redundant genes of Arabidopsis that give a seed phenotype when disrupted by mutation.
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ppdb -- a plant promoter database
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| Locate promoter annotation of Arabidopsis and rice.
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