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AgBase -- a unified resource for functional analysis in agriculture
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| Search and analyze functional genomics datasets in agricultural species.
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AutoSNPdb -- an annotated single nucleotide polymorphism database for crop plants
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| Identify SNPs from assembled EST sequences for the crops rice, barley and Brassica.
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BarleyBase -- an expression profiling database for plant genomics
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| Analyze and visualize plant microarray data.
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CR-EST -- a resource for crop ESTs
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| Search for sequence, classification, clustering and annotation data of crop EST projects.
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CSRDB -- a small RNA integrated database and browser resource for cereals
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| Search for sequence information on rice, maize and other cereal crops small RNAs.
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ChromDB -- the Chromatin Database
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| Locate chromatin-associated proteins, including RNAi-associated proteins, for a broad range of organisms.
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DRASTIC—INSIGHTS -- querying information in a plant gene expression database
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| Search for information of plant gene expression in response to pathogens and environmental changes.
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FLAGdb++ -- A Database for the Functional Analysis of the Arabidopsis Genome
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| Search and visualize data for high-throughput functional analysis of Arabidopsis, rice, and other plant genomes.
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GCP -- The Generation Challenge Programme
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| An online resource documenting stress-responsive genes comparatively across plant species.
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GGT -- Graphical GenoTypes
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| Software for visualization and analysis of genetic data.
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GabiPD -- a plant integrative 'omics' database
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| Search for comprehensive and extensive information on various plant genomes generated by a German collaborative network of plant genomics research.
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GeneSeqer@PlantGDB -- gene structure prediction in plant genomes
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| Predict gene structures of plant genomes. |
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GrainGenes -- The genome database for small-grain crops
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| Search for molecular and phenotypic information on wheat, barley, rye, triticale, and oats.
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Gramene -- a resource for comparative grass genomics
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| Curated resource for genetic, genomic and comparative genomics data for the major crop species, including rice, maize, wheat and many other plant (mainly grass) species.
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GénoPlante-Info (GPI) -- A collection of databases and bioinformatics resources for plant genomics
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| Search for genomic information on five major crop species (corn, wheat, rapeseed, sunflower seed and pea crops) and and model plants (Arabidopsis and rice).
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MIPSPlantsDB — plant database resource for integrative and comparative plant genome research
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| Conduct comparative and integrative plant genomics research.
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MetaCrop -- a detailed database of crop plant metabolism
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| A database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models.
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P3DB -- Plant Protein Phosphorylation Database
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| Find information about protein phosphorylation in plants.
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PHYTOPROT -- A Database of Clusters of Plant Proteins
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| Search for clustered plant protein sequences available from SwissProt/TrEMBL.
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PLACE -- Plant cis-acting regulatory DNA elements
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| Search for documented motifs found in plant cis-acting regulatory DNA elements. |
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PLANT-PIs -- A database for protease inhibitors and their genes in higher plants
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| Search for information on plant protease inhibitors (PIs) and related genes.
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PODB -- the Plant Organelles Database
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| Search a collection of visualized plant organelles and protocols for plant organelle research.
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POGs/PlantRBP -- a resource for comparative genomics in plants
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| Search for information on putative orthologous proteins among rice, maize and Arabidopsis with emphasis on RNA-binding proteins.
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PathoPlant® -- a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses
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| Search for information on plant-pathogen interactions, signal transduction, and microarray gene expression during plant pathogenesis.
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Phytome -- a platform for plant comparative genomics
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| Conduct comparative genomic study of plants.
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Plant MPSS databases -- signature-based transcriptional resources for analyses of mRNA and small RNA
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| Search for gene expression data in model plants generated by MPSS (massively parallel signature sequencing) technology.
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Plant snoRNA database
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| Search for comprehensive information on small nucleolar RNAs in plants. |
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PlantCARE -- A database of plant cis-acting elements
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| Search for information on plant cis-acting regulatory elements, transcription sites, enhancers and repressors. |
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PlantGDB -- Plant Genome Database and Analysis tools
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| A genomics database encompassing sequence data for green plants (Viridiplantae).
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PlantMarkers -- a database of predicted molecular markers from plants
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| Search for plant genetic marker from a comprehensive pool of predicted molecular markers.
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PlantProm -- A database of plant promoter sequences
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| Search for promoter sequences for RNA polymerase II with experimentally determined transcription start sites from various plant species.
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PlantTFDB -- Plant Transcription Factor Databases
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| A comprehensive plant transcription factor database.
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PlantTribes -- a gene and gene family resource for comparative genomics in plants
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| A plant gene family database based on the inferred proteomes of five sequenced plant species: Arabidopsis thaliana, Carica papaya, Medicago truncatula, Oryza sativa and Populus trichocarpa.
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Sputnik -- A database platform for comparative plant genomics
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| Search for ESTs from over 20 different plant species.
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The Adaptive Evolution Database (TAED) -- a phylogeny based tool for comparative genomics
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| Search for information on adaptive evolution in gene families of higher plants and chordate. |
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The Plant DNA C-values Database
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| Search for information on plant DNA C-values and genome sizes.
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The PlantsP Functional Genomics Database
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| Search for information on plant kinases and phosphatases.
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The PlantsT Functional Genomics Databases
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| Search for genes and proteins involved in plant membrane transportation.
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The TIGR Plant Repeat Databases -- A Collective Resource for the Identification of Repetitive Sequences in Plants
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| Identify, classify, and analyze repetitive sequences in plant genomes.
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The TIGR Plant Transcript Assemblies database
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| Search for plant EST and cDNA sequences from this comprehensive collection.
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TropGENE-DB -- A Multi-tropical Crop Information System
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| Search for genetic, molecular and phenotypic data of tropical crop species.
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UK CropNet -- a collection of databases and bioinformatics resources for crop plant genomics
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| Search sequences and genomic information on crop plants.
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openSputnik — a database to ESTablish comparative plant genomics using unsaturated sequence collections
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| Search for annotated information on plant expressed sequences tags (ESTs).
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