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URL:
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http://www.ebi.ac.uk/clustr/
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What you can do:
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Study protein classification based on an automatic classification of SWISS-PROT+TrEMBL proteins into groups of related proteins.
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Highlights:
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- The CluSTr database offers an automatic classification of UniProt Knowledgebase proteins into groups of related proteins. The clustering is based on analysis of all pairwise comparisons between protein sequences.
- Both hierarchy of clusters of related proteins ordered by their degree of similarity and hierarchies for the proteins of each individual species are available.
- It contains information about proteins from 145 organisms with completely sequenced genomes.
- Proteomes represented in CluSTr include 10 complete eukaryote proteomes (Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Encephalitozoon cuniculi, Guillardia theta, Homo sapiens, Mus musculus, Saccharomyces cerevisiae, Schizosaccharomyces pombe and Rattus norvegicus).
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Keywords:
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- protein classification
- protein clustering
- eukaryote proteomes
- protein domain classification
- domain architectures
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Literature and Tutorials:
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PubMed Link: CluSTr
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This record last updated: 05-25-2006
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