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URL:
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http://ekhidna.biocenter.helsinki.fi:9801/sqgraph/pairsdb
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What you can do:
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Search for information on protein domain family.
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Highlights:
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- Automatic Domain Decomposition Algorithm (ADDA)is used to generate a database of protein domain families with complete coverage of all protein sequences.
- Sequences are split into domains and domains are grouped into protein domain families in a completely automated process.
- It uses alignments derived from an all-on-all sequence comparison to define domains within protein sequences based on a global maximum likelihood model.
- The current database contains domains for more than 1.5 million sequences in more than 40,000 domain families. In particular, there are 3828 novel domain families that do not overlap with the curated domain databases Pfam, SCOP and InterPro.
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Keywords:
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- protein domains
- protein domain decomposition
- protein domain search tool
- protein domain family
- protein family
- protein superfamily
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Literature and Tutorials:
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PubMed Link: ADDA
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