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AARSDB -- Aminoacyl-tRNA synthetases database
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| Search for sequences and 3D structures of Aminoacyl-tRNA synthetases.
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ABCdb -- Archaeal and Bacterial ABC transporter database
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| Search for comprehensive information on ATP-binding cassette (ABC) transporters in archaeal and bacterial genomes. |
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AMYPdb -- a database dedicated to amyloid precursor proteins
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| Database dedicated to amyloid precursor proteins.
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ASPD (Artificially Selected Proteins/Peptides Database) -- A database of proteins and peptides evolved in vitro
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| Search for information on full-length proteins, protein domains and peptides that were obtained through in vitro directed evolution processes.
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AraC-XylS database -- a family of positive transcriptional regulators in bacteria
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| Search information about a family of positive transcriptional regulators broadly distributed in bacteria. |
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BacTregulators -- A database of transcriptional regulators in prokaryotes
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| Search for sequences and other information about prokaryotic transcriptional regulators.
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CSDBase - Cold Shock Domain database and the bacterial cold shock response
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| Search for detailed information on proteins containing the cold shock domain.
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CuticleDB -- Structural proteins of Arthropod cuticle
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| Search for information on all known structural proteins of Arthropod cuticle.
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CyBase -- a database of cyclic protein sequences and structures, with applications in protein discovery and engineering
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| Search for curated sequence and structure information on cyclic proteins. |
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CytoSVM -- Cytokine Support Vector Machine
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| An advanced server for identification of cytokine-receptor interactions.
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DCCP -- Database of Copper-Chelating Proteins
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| Search for information on Copper-Chelating Proteins.
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Defensins knowledgebase -- a manually curated database and information source focused on the defensins family of antimicrobial peptides
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| Search for annotated information on the defensin family of antimicrobial peptides.
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EF-Hand Calcium-Binding Proteins Data Library
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| Search for sequence and structural information on EF-hand proteins.
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ESTHER --Database of the alpha/ß-hydrolase Fold Superfamily of Proteins
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| To analyze protein and nucleic acid sequences belonging to the superfamily of alpha/beta hydrolases homologous to cholinesterases.
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Endogenous GPCR List
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| Search for experimental results and literature on Endogenous G protein coupled receptors.
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GPCR NaVa -- G Protein-Coupled Receptors Natural Variants database
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| Locate natural variants in human G protein-coupled receptors.
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GPCRDB information system for G protein-coupled receptors
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| Search for a variety of information on G protein-coupled receptors (GPCRs).
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GPCRpred -- An SVM-based Method for Prediction of Families and Subfamilies of G-protein Coupled Receptors
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| Predict families and subfamilies of GPCRs from the dipeptide composition of proteins.
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GPCRsclass -- a web tool for the classification of amine type of G-protein-coupled receptors
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| Predict amine-binding G-protein-coupled receptors (GPCRs) based on amino acid sequences.
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GRIFFIN -- a system for predicting GPCR–G-protein coupling selectivity using a support vector machine and a hidden Markov model
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| Predict G-protein coupled receptor (GPCR) and G-protein coupling selectivity based on a support vector machine (SVM) and a hidden Markov model (HMM) with high sensitivity and specificity.
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HORDE -- Human olfactory receptor data exploratorium
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| Search for comprehensive information on human Olfactory Receptors.
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HOX Pro DB -- the functional genomics of hox ensembles
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| Search for information about the organization, function and evolution of gene ensembles, notably the homeobox-containing genes.
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Histone Database
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| Search for histone fold-containing protein sequences derived from sequence-similarity searches of public databases.
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KNOTTIN -- the knottin or inhibitor cystine knot scaffold
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| Search for dynamically generated tabular reports or sequence alignments for knottin three-dimensional structures or sequences.
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KinBase -- a protein kinase gene resource
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| Search comprehensive information about protein kinases from human, mouse, yeast, fruit fly, worm, and other model organisms.
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KinG -- A Database of Protein Kinases in Genomes
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| To retrieve amino acid sequences, functional domain assignments and classification of gene products containing protein kinase domains.
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LGICdb -- Ligand-Gated Ion Channels Database
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| Search for both nucleic acid and protein sequences of ligand-gated ion channels.
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LOX-DB -- A database on lipoxygenases.
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| Search for sequence and structure information about lipoxygenases (particularly in human).
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MDB -- The Metalloprotein Database and Browser at The Scripps Research Institute
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| Search for quantitative information on geometrical parameters of metal-binding sites in protein structures available from the Protein Data Bank. |
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MEROPS -- the Peptidase Database
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| To search for information on peptidases,sequences and classifications, and their natural inhibitors.
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NRSAS -- Nuclear Receptor Structure Analysis Servers
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| Analyze Nuclear Receptor structures. |
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NUREBASE -- Nuclear Hormone Receptor Functional Genomics
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| To search for protein and DNA sequences, reviewed protein alignments and phylogenies, taxonomy and annotations for all nuclear receptors.
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NetworKIN -- a resource for exploring cellular phosphorylation networks
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Neurotrophic Factors
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| Search for information on the structure of Nerve Growth Factor (NGF) and related neurotrophins.
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NucleaRDB -- A database of nuclear receptors
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| Search for nuclear receptors sequences and structure information.
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Nuclear Receptor Resource
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| Search for comprehensive information on members of the nuclear receptor superfamily.
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ORDB -- Olfactory Receptor DataBase
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| Search for olfactory receptor (OR) and olfactory receptor-like gene and protein sequences.
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PRED-GPCR -- GPCR Recognition and Family Classification Server
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| Recognize and classify G-protein coupled receptors (GPCRs) at the family level.
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Predikin -- predict substrates of protein kinases
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| Prediction of protein kinase peptide specificity using structural information.
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Prolysis -- Proteases and natural and synthetic protease inhibitors
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| Search for information on Proteases and natural and synthetic protease inhibitors.
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REBASE -- restriction enzymes and DNA methyltransferases
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| Find restriction enzyme information from the restriction enzyme database.
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RPG -- the Ribosomal Protein Gene Database
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| To search for detailed information about ribosomal protein (RP) genes.
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RTKdb -- A database of receptor tyrosine kinase
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| Search information for metazoan Receptor Tyrosine Kinases (RTK) transmembrane receptors.
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Ribonuclease P Database
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| Search for comprehensive information on Ribonuclease P.
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S/MARt DB -- A database on scaffold/matrix attached regions
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| Search for information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix.
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SDAP -- Database and computational tools for allergenic proteins
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| Perform structural studies of allergenic proteins related to allergens and characterization of their epitopes.
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SENTRA -- A Database of Signal Transduction Proteins for Prokaryotes
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| Search for annotated sequence information of prokaryotic signal transduction proteins.
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SEVENS -- A database of seven-transmembrane-helix receptors (7-TMR)
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| Search for sequence information of documented and predicted seven-transmembrane-helix receptors (7-TMR), also known as G-protein-coupled receptors.
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SRPDB -- Signal Recognition Particle Database
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| Search for information on sequences, structures and functions of the signal recognition particle. |
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SelenoDB -- a database of selenoprotein genes, proteins and SECIS elements
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| Database of eukaryotic selenoprotein genes, proteins, SECIS elements and related molecules.
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TCDB -- the Transporter Classification Database for membrane transport protein analyses and information
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| Search for comprehensive information on documented and predicted membrane transport protein. |
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THE HOMEOBOX PAGE
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| Search for links and information sources on homeobox genes and homeodomain proteins.
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The DExH/D protein family database
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| Search for information about the DExH/D protein family with particular emphasis on the biochemical and functional characteristics of these proteins.
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The EROP-Moscow oligopeptide database
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| Search for comprehensive information from this curated and annotated oligopeptide database.
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The Homeodomain Resource
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| Search for curated information for the homeodomain protein family.
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The Lipase Engineering Database -- A navigation and analysis tool for protein families
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| Search for information on sequence, structure, and function of lipases, esterases, and related proteins.
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The Nuclear Protein Database (NPD) -- Sub-nuclear localization and functional annotation of the nuclear proteome
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| Search for information on proteins that are localized to the nucleus of vertebrate cells.
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The Protein Kinase Resource
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| Search the Protein Kinase Resource (PKR) for information on protein kinase family of enzymes
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TrSDB -- A Proteome Database of Transcription Factors
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| To search for proteomic information on eukaryotic transcription factors.
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TransportDB -- A Relational Database of Cellular Membrane Transport Systems
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| Predict cellular membrane transport proteins in organisms whose complete genome sequences are available. |
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VKCDB -- voltage-gated potassium channel database
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| Search for comprehensive information on voltage-gated potassium channel.
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Wnt Database
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| Search for comprehensive information on Wnt proteins and Wnt signaling pathways.
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gpDB -- a database of G-proteins and their interaction with GPCRs
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| Search for information on G-proteins and their interactions with GPCRs.
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ooTFD -- Object-oriented Transcription Factors Database
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| Search for binding and interactions information of transcription factors.
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tGRAP -- the G-protein coupled receptors mutant database
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| Search for information and data on data on mutated G-protein coupled receptors (GPCRs). |
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