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DBSubLoc -- Database of Protein Subcellular Localization
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| To search for information on protein subcellular localization.
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ESLpred -- SVM-based Method for Subcellular Localization of Eukaryotic Proteins Using Dipeptide Composition and PSI-BLAST
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| Predict the subcellular location of eukaryotic proteins from their different features such as amino acid composition, dipeptide composition and physico-chemical properties.
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Flytrap -- A Database Documenting a GFP Protein-trap Insertion Screen in Drosophila melanogaster
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| Search and visualize protein localization in Drosophila melanogaster. |
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LOC3D -- annotate sub-cellular localization for protein structures
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| Search and predict sub-cellular localization for eukaryotic proteins of known three-dimensional (3D) structure.
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LOCATE -- a mammalian protein subcellular localization database
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| Search for data describing the membrane organization and subcellular localization of mouse and human proteins.
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LOCSVMPSI -- a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST
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| Predict eukaryotic protein subcellular localization.
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LOCnet and LOCtarget -- sub-cellular localization for structural genomics targets
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| Predict sub-cellular localization of proteins from their amino acid sequence.
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MAPU -- Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes
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| Search for information on organellar, cellular, tissue and body fluid proteomes generated by mass spectrometry based proteomics technology. |
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NESbase -- A database of nuclear export signals
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| Search for information on nuclear export signals.
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NLSdb -- Database of nuclear localization signals
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| Search for information on nuclear localization signals (NLSs) and nuclear proteins.
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NMPdb -- Database of Nuclear Matrix Proteins
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| Search for published information on nuclear matrix proteins.
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NOPdb -- Nucleolar Proteome Database
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| Search for data on human nucleolar proteins.
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NURSA -- Nuclear Receptor Signaling Atlas
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| Search for comprehensive information on nuclear receptors at this portal site of nuclear receptor research community.
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Nuc-PLoc -- Predicting protein subnuclear localization
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| A new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM.
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PA-GOSUB -- a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization
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| Search for sequences, predicted GO molecular functions and predicted subcellular localizations of more than 107,000 proteins from 10 model organisms. |
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PSORTb v.2.0 -- expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.
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| Predict bacterial protein subcellular localizations.
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PSORTdb -- a protein subcellular localization database for bacteria
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| Search for information about bacterial protein subcellular localization.
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Predict NLS -- prediction and analysis of nuclear localization signals
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| Predict the presence of nuclear localization signal in a protein sequence.
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Predotar -- Predotar for Prediction of organelle targeting sequences
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| Identify putative mitochondrial and plastid targeting sequences in a protein sequence.
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SPD -- a web-based secreted protein database
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| Search for information of secreted proteins from Human, Mouse and Rat proteomes.
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SUBA -- the Arabidopsis Subcellular Database
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| Search for integrated information on subcellular localization of Arabidopsis proteome. |
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SignalP -- Machine learning approaches to the prediction of signal peptides, their cleavage sites, and other protein sorting signals
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| Predict signal peptides and their cleavage sites. |
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THGS -- Database of Transmembrane Helices in Genome Sequences
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| To search sequence motifs in transmembrane and globular proteins.
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TMPDB -- A database of experimentally-characterized transmembrane topologies
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| Search for information about experimentally-characterized transmembrane (TM) topologies
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TarO -- a target optimisation system for structural biology
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| A single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural biology techniques.
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TargetP -- subcellular location and cleavage sites prediction tool
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| Predict the subcellular localization of a protein sequence
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The Nuclear Protein Database (NPD) -- Sub-nuclear localization and functional annotation of the nuclear proteome
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| Search for information on proteins that are localized to the nucleus of vertebrate cells.
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The PredictProtein server
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| Predict protein structure and function based on protein sequence. |
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The TRIPLES database -- a community resource for yeast molecular biology
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| Search for Saccharomyces phenotypic data, protein localization data and gene expression data. |
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WoLF PSORT -- Protein Subcellular Localization Prediction
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| Predict the subcellular localization sites of proteins based on their amino acid sequences.
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eSLDB -- eukaryotic subcellular localization database
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| Search for annotated information on subcellular localization of eukaryotic proteomes.
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pTARGET -- a web server for predicting protein subcellular localization
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| Prediction protein subcellular localization in eukaryotic non-plant species.
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