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URL:
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http://cubic.bioc.columbia.edu/db/LOC3d/
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What you can do:
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Search and predict sub-cellular localization for eukaryotic proteins of known three-dimensional (3D) structure.
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Highlights:
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- LOC3D is both a weekly-updated database and a web server for predictions of sub-cellular localization for eukaryotic proteins of known three-dimensional (3D) structure.
- Localization is predicted using four different methods: (i) PredictNLS, prediction of nuclear proteins through nuclear localization signals; (ii) LOChom, inferring localization through sequence homology; (iii) LOCkey, inferring localization through automatic text analysis of SWISS-PROT keywords; and (iv) LOC3Dini, ab initio prediction through a system of neural networks and vector support machines. The final prediction is based on the method that predicts localization with the highest confidence.
- The web server can be used to predict sub-cellular localization for proteins for which only a predicted structure is available from threading servers.
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Keywords:
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- protein localization prediction tool
- protein sub-cellular localization prediction tool
- protein localizations
- Nuclear Localization Signal
- Nuclear Localization Signal prediction tool
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Literature and Tutorials:
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PubMed Link: LOC3D -- annotate sub-cellular localization for protein structures
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