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URL:
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http://dlb4.stanford.edu/3motif/
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What you can do:
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Use this web-based sequence motif visualization system to display sequence motif information in its appropriate three-dimensional (3D) context.
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Highlights:
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- This system is flexible in that users can enter sequences, keywords, structures or sequence motifs to generate visualizations.
- In 3MOTIF, users can search using discrete sequence motifs such as PROSITE patterns, eMOTIFs, or any other regular expression-like motif.
- Please also check out the 3MATRIX tool, which accepts an eMATRIX position-specific scoring matrix, or will convert a multiple sequence alignment block into an eMATRIX for visualization.
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Keywords:
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- protein multiple sequence alignment visualization tool
- protein motif analysis tool
- protein motif visualization tool
- protein structure analysis tool
- protein structures
- protein motifs
- Amino Acid Motifs
- conserved sequence motifs
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Literature and Tutorials:
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PubMed Link: 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs
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