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URL:
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http://bioinformatics.albany.edu/~mitopred/
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What you can do:
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Predict nucleus-encoded mitochondrial proteins in all eukaryotic species.
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Highlights:
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- Predictions are made using a algorithm based primarily on Pfam domain occurrence patterns in mitochondrial and non-mitochondrial locations.
- Pre-calculated predictions are instantly accessible for proteomes of Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila, Homo sapiens, Mus musculus and Arabidopsis species as well as all the eukaryotic sequences in the Swiss-Prot and TrEMBL databases.
- Queries, at different confidence levels, can be made through four distinct options: (i) entering Swiss-Prot/TrEMBL accession numbers; (ii) uploading a local file with such accession numbers; (iii) entering protein sequences; (iv) uploading a local file containing protein sequences in FASTA format.
- Automated updates are scheduled for the pre-calculated prediction database so as to provide access to the most current data.
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Keywords:
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- mitochondrial proteins
- nucleus-encoded mitochondrial proteins
- nuclear-encoded mitochondrial proteins
- protein prediction
- mitochondrial protein structures
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Literature and Tutorials:
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PubMed Link: MITOPRED
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This record last updated: 10-25-2006
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