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URL:
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http://www.dbmi.pitt.edu/EPO-KB
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What you can do:
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A searchable knowledge base of biomarker to protein links.
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Highlights:
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- EPO-KB is based on an OWL ontology that represents current knowledge linking mass-to-charge (m/z) ratios to proteins on multiple platforms including Matrix Assisted Laser/Desorption Ionization (MALDI) and Surface Enhanced Laser/Desorption Ionization (SELDI)--Time of Flight (TOF).
- It contains information on m/z ratio to protein links that were extracted from 120 published research papers.
- It has a web interface that allows researchers to query and retrieve putative proteins that correspond to a user-specified m/z ratio.
- EPO-KB also allows automated entry of additional m/z ratio to protein links and is expandable to the addition of gene to protein and protein to disease links.
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Keywords:
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- Biological Markers
- Biomarker
- Proteomics
- Ontology
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Literature and Tutorials:
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PubMed Link: EPO-KB: a searchable knowledge base of biomarker to protein links
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