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PathwayArchitect, from Stratagene, uses curated and automatically created databases to:
- identify relationships among genes, small molecules, cell objects and processes
- build networks
- create pathway diagrams suitable for publication
Software Access
Please register to receive download instructions for Windows or Mac and examine the User Guide.
Noteworthy Features
- Next generation natural language processing (NLP) engine reads biological literature to extract facts.
- Gene/Protein annotations include: Entrez gene annotations, alias (synonyms), subcellular locations, gene ontology terms and microarray IDs.
- Build interaction networks with multiple algorithms including direct interactions, shortest path, putative targets and putative regulators.
- Perform functional analysis of the genes in your study to quickly identify which biological processes are involved.
- Extract biological interactions from PubMed abstracts, full-text journal articles (text, or PDF), and internal documents.
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