Nucleotide query - Protein db [blastx]

URL:

http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=50&ALIGNMENT_VIEW=Pairwise&CLIENT=web&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=(none)&EXPECT=10&FILTER=L&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&GENETIC_CODE=1&HITLIST_SIZE=100&NCBI_GI=on&PAGE=Translations&PROGRAM=blastx&SERVICE=plain&SET_DEFAULTS.x=37&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&UNGAPPED_ALIGNMENT=no&END_OF_HTTPGET=Yes

What you can do:

Find similar proteins to the translated query in a PROTEIN database. Blastx compares the translation of the nucleotide query sequence to a protein database

Highlights:

Useful when trying to find homologous proteins to a nucleotide coding region.
Translates the query sequence in all six reading frames.

Keywords:

Translated BLAST
blastx

Literature & Tutorials:

This record last updated: 05-10-2005

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