Nematode.net -- A Tool for Navigating Sequences from Parasitic and Free-living Nematodes
What you can do:
Search genomic and EST data on nematodes.
Highlights:
- Nematode.net was implemented to offer user-friendly access to over 500,000 ESTs and 1.2 million genome survey sequences from more than 30 non-Caenorhabditis elegans nematodes.
- The site hosts: assembled NemaGene clusters in GBrowse views characterizing composition and protein homology, functional Gene Ontology annotations presented via the AmiGO browser, KEGG-based graphical display of NemaGene clusters mapped to metabolic pathways, codon usage tables, NemFam protein families which represent conserved nematode-restricted coding sequences not found in public protein databases, a web-based WU-BLAST search tool that allows complex querying and other assorted resources.
Keywords:
- nematodes
- nematode genomes
- nematode genomic data warehouse
- nematode ESTs
- nematode expressed sequence tags
- Caenorhabditis elegans
- C. elegans
- human parasites
- animal parasites
- plant parasites
Literature & Tutorials:
PubMed Link: Nematode.net
-- 2009 Update: Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics
-- 2009 Update: Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics
This record last updated: 02-06-2009