The UCSC Proteome Browser

What you can do:
Search for a wealth of protein information presented in graphical images and with links to other protein-related Internet sites.
Highlights:
  • The UCSC Proteome Browser is tightly integrated with the UCSC Genome Browser.
  • The Proteome Browser displays tracks of protein and genomic sequences, exon structure, polarity, hydrophobicity, locations of cysteine and glycosylation potential, Superfamily domains and amino acids that deviate from normal abundance. Histograms show genome-wide distribution of protein properties, including isoelectric point, molecular weight, number of exons, InterPro domains and cysteine locations, together with specific property values of the selected protein.
  • The Proteome Browser also provides links to gene annotations in the Genome Browser, the Known Genes details page and the Gene Sorter; domain information from Superfamily, InterPro and Pfam; three-dimensional structures at the Protein Data Bank and ModBase; and pathway data at KEGG, BioCarta/CGAP and BioCyc.
  • As of August 2004, the Proteome Browser is available for human, mouse and rat proteomes.
Keywords:
  • proteome
  • proteome portal
  • human proteome
  • mouse proteome
  • rat proteome
  • gene annotations
  • exon structures
  • protein Superfamily
  • protein domains
  • protein sequence property
  • protein isoelectric point
  • hydrophobicity
  • cysteine bond
  • cysteine locations
  • glycosylation potential
  • protein structures
  • 3D structures
Literature & Tutorials:
PubMed Link: UCSC Proteome Browser
This record last updated: 05-02-2005
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