InParanoid -- eukaryotic ortholog clusters with inparalogs
What you can do:
Search for pairwise eukaryotic ortholog groups between 17 whole genomes.
Highlights:
- The InParanoid project gathers proteomes of completely sequenced eukaryotic species plus Escherichia coli and calculates pairwise ortholog relationships among them.
- The new release 7.0 of the database now includes 100 species and their collective 1.3 million proteins organized into 42.7 million pairwise ortholog groups.
- The InParanoid algorithm itself has been revised and is now both more specific and sensitive.
- To facilitate data exchange and comparisons among ortholog databases, two XML schemas were developed: SeqXML for the input sequences and OrthoXML for the output ortholog clusters.
Keywords:
- eukaryotic orthologs
- eukaryotic proteomes
- Anopheles gambiae
- Caenorhabditis briggsae
- Caenorhabditis elegans
- Drosophila melanogaster
- Danio rerio
- Takifugu rubripes
- Gallus gallus
- Homo sapiens
- Mus musculus
- Pan troglodytes
- Rattus norvegicus
- Oryza sativa
- Plasmodium falciparum
- Arabidopsis thaliana
- Escherichia coli
- Saccharomyces cerevisiae
- Schizosaccharomyces pombe
Literature & Tutorials:
PubMed Link: Inparanoid
-- 2008 Update: InParanoid 6: eukaryotic ortholog clusters with inparalogs
-- 2010 Update: InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
-- 2008 Update: InParanoid 6: eukaryotic ortholog clusters with inparalogs
-- 2010 Update: InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
This record last updated: 01-25-2010