DynaProt 2D -- an advanced proteomic database for dynamic online access to proteomes and two-dimensional electrophoresis gels

URL:
http://www.wzw.tum.de/proteomik/lactis
What you can do:
Search for information on proteomes and two-dimensional (2D) gels.
Highlights:
  • The database was designed to administer complete in silico proteomes and links them with experimental proteomic data in the manner of 2D electrophoresis gels.
  • The 2D gels serve as reference maps in 2D gel analysis as well as tools for navigation of the database to switch between experimental and predicted data.
  • All identified spots in the gels are clickable and linked with summarized protein information.
  • The protein information tables contain calculated characteristics, which are often used in proteomics, such as the molecular weight, isoelectric point, codon adaptation index, grand average of hydropathicity, etc.
  • The design of the database permits online extension of gel data and protein attributes without knowledge of any software language. Besides navigation via 2D gels, the clear graphical user interface permits quick and intuitive searching throughout complete proteomes and supports, e.g. the search for proteins with isoelectric points within pH ranges of interest or protein classes.
  • The first organism implemented in the database is Lactococcus lactis.
Keywords:
  • proteome
  • proteomics data
  • in silico proteomes
  • 2D gels
  • 2D PAGE
  • gel electrophoresis
  • codon adaptation index
  • isoelectric points
  • hydropathicity
  • Lactococcus lactis proteome
  • protein sequence properties
Literature & Tutorials:
PubMed Link: DynaProt 2D
This record last updated: 05-03-2005
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