SPA -- simple web tool to assess statistical significance of DNA patterns
What you can do:
Compute DNA sequence pattern occurrences p-value on text.
Highlights:
- SPatt (Statistic for Patterns) is a suite of C++ programs designed for the computation of pattern occurrences p-value on text.
- Assuming the text is generated according to Markov model, the p-value of a given observation is its probability to occur.
- The lower is the p-value, the more unlikely is the observation.
- This tools can be used to find patterns with unusual behavior in DNA sequences.
Keywords:
- DNA sequence patterns
- DNA motifs
- DNA motif analysis tool
- DNA sequence analysis tool
- transcription factor binding site analysis tool
- DNA-binding site analysis tool
- promoter analysis tool
- transcription factor binding sites
- cis-elements
- cis-elements prediction tool
- regulatory element analysis tool
- promoter element analysis tool
Literature & Tutorials:
This record last updated: 06-16-2005