pdbFun -- mass selection and fast comparison of annotated PDB residues
What you can do:
Perform and functional analysis of proteins at the residue level.
Highlights:
- pdbFun gives fast access to the whole Protein Data Bank organized as a database of annotated residues.
- The available data (features) range from solvent exposure to ligand binding ability, location in a protein cavity, secondary structure, residue type, sequence functional pattern, protein domain and catalytic activity.
- Users can select any residue subset (even including any number of PDB structures) by combining the available features.
- Selections can be used as probe and target in multiple structure comparison searches.
- Possible examples of targets are represented by another selection, a single structure or a dataset composed of many structures.
- The output is a list of aligned structural matches offered in tabular and also graphical format.
Keywords:
- protein structure analysis tool
- protein domain analysis tool
- protein structure comparison tool
- protein active sites analysis tool
- protein binding sites analysis tool
- protein secondary structure analysis tool
Literature & Tutorials:
This record last updated: 09-16-2005