PatMatch -- a program for finding patterns in peptide and nucleotide sequences
What you can do:
Search for short nucleotide or peptide sequences such as cis-elements in nucleotide sequences or small domains and motifs in protein sequences.
Highlights:
- The program can be used to find matches to a user-specified sequence pattern that can be described using ambiguous sequence codes and a powerful and flexible pattern syntax based on regular expressions.
- A recent upgrade has improved performance and now supports both mismatches and wildcards in a single pattern.
- The stand-alone version of the software can be adapted for use with any sequence dataset and is available for download at The Arabidopsis Information Resource (TAIR) at ftp://ftp.arabidopsis.org/home/tair/Software/Patmatch/.
- The PatMatch server is available on the Web.
Keywords:
- protein motifs
- amino acid motifs
- protein sequence pattern search tool
- DNA sequence pattern search tool
- nucleotide sequence patterns
- protein motif patterns
- protein motif pattern analysis tool
- protein domain search tool
Literature & Tutorials:
This record last updated: 11-08-2005