AthaMap -- integrating transcriptional and post-transcriptional data
What you can do:
Generate a map of cis-regulatory elements for the Arabidopsis thaliana genome.
Highlights:
- The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome.
- AthaMap has now been extended to include data on post-transcriptional regulation.
- A total of 403,173 genomic positions of small RNAs have been mapped in the A. thaliana genome.
- These identify 5772 putative post-transcriptionally regulated target genes.
- AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses.
- Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased.
Keywords:
- Arabidopsis thaliana genome
- Arabidopsis transcription factors
- Arabidopsis cis-regulatory elements
- transcription factor binding site prediction tool
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- cis-elements prediction tool
- cis-regulatory elements prediction tool
- DNA sequence analysis tool
- promoter analysis tool
- promoter elements prediction tool
- combinational cis-regulatory elements
Literature & Tutorials:
PubMed Link: AthaMap
2007 Update: AthaMap web tools for the analysis and identification of co-regulated genes
--- 2009 Update: AthaMap, integrating transcriptional and post-transcriptional data
2007 Update: AthaMap web tools for the analysis and identification of co-regulated genes
--- 2009 Update: AthaMap, integrating transcriptional and post-transcriptional data
This record last updated: 01-06-2009