HHsenser -- exhaustive transitive profile search using HMMx96HMM comparison
What you can do:
Conduct exhaustive intermediate profile searches of a set of homologous protein sequences.
Highlights:
- HHsenser is the first server to offer exhaustive intermediate profile searches, by combining with pairwise comparison of hidden Markov models.
- Starting from a single protein sequence or a multiple alignment, it can iteratively explore whole superfamilies, producing few or no false positives.
- The output is a multiple alignment of all detected homologs.
- It may also aid applications that rely on diverse multiple sequence alignments as input, such as homology-based structure and function prediction, or the determination of functional residues by conservation scoring and functional subtyping.
Keywords:
- protein sequence analysis tool
- protein profile search tool
- protein motif detection tool
- protein homologous sequence analysis tool
Literature & Tutorials:
This record last updated: 07-26-2006