ProdoNet -- identification and visualization of prokaryotic gene regulatory and metabolic networks
What you can do:
Application for the mapping of prokaryotic genes and the corresponding proteins to common gene regulatory and metabolic networks.
Highlights:
- For a given list of genes, the system detects shared operons, identifies co-expressed genes and deduces joint regulators.
- In addition, the contribution to shared metabolic pathways becomes visible on KEGG maps.
- Furthermore, the co-occurrence of genes of interest in gene expression profiles can be added to the visualization of the global network.
- In this way, ProdoNet provides the basis for functional genomics approaches and for the interpretation of transcriptomics and proteomics data.
- The ProdoNet dataset on transcriptional regulation is based on the PRODORIC Prokaryotic Database of Gene Regulation and the Virtual Footprint tool.
Keywords:
- gene regulatory networks
- metabolic networks
- metabolic pathways
- gene expression profiles
- functional genomics
- transcriptomics
- transcriptional regulation
Literature & Tutorials:
This record last updated: 07-29-2008