Bionemo -- molecular information on biodegradation metabolism
What you can do:
Find information about proteins and genes directly implicated in biodegradation metabolism.
Highlights:
- Bionemo includes information on sequence, domains and structures for proteins; and sequence, regulatory elements and transcription units for genes.
- Bionemo has been built by manually associating sequences database entries to biodegradation reactions, using the information extracted from published articles.
- Information on transcription units and their regulation was also extracted from the literature for biodegradation genes, and linked to the underlying biochemical network.
- It contains sequence information for 324 reactions and transcription regulation information for more than 100 promoters and 100 transcription factors.
- The information in the Bionemo database is available via a web server and the full database is also downloadable as a PostgresSQL dump.
- To facilitate the programmatic use of the information contained in the database, an object-oriented Perl API is also provided.
Keywords:
- biodegradation metabolism
- enzymatic complexes
- metabolic pathways
- metabolic regulation
- transcription regulation
- biodegradation
Literature & Tutorials:
This record last updated: 02-04-2009