w3DNA -- 3D DNA Structure web server

URL:
http://w3dna.rutgers.edu/
What you can do:
Find information about nucleic acid structures.
Highlights:
  • The w3DNA server is a user-friendly web-based interface to the 3DNA suite of programs for the analysis, reconstruction, and visualization of three-dimensional (3D) nucleic-acid-containing structures, including their complexes with proteins and other ligands.
  • The server allows the user to determine a wide variety of conformational parameters in a given structure--such as the identities and rigid-body parameters of interacting nucleic-acid bases and base-pair steps, the nucleotides comprising helical fragments, etc.
  • It is possible to build 3D models of arbitrary nucleotide sequences and helical types, customized single-stranded and double-helical structures with user-defined base-pair parameters and sequences, and models of DNA 'decorated' at user-defined sites with proteins and other molecules.
  • The visualization component offers representations of nucleic-acid structures, such as 'block' images of bases and base pairs and stacking diagrams of interacting nucleotides.
Keywords:
  • DNA
  • nucleic acid
  • DNA structure
  • DNA complex
Literature & Tutorials:
PubMed Link: MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS
This record last updated: 09-24-2009
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