MouseIndelDB -- Mouse Indel Polymorphism Database

URL:
http://variation.osu.edu/mouse_indel/index.html
What you can do:
Find information about mouse genomic insertion and deletion polymorphisms.
Highlights:
  • MouseIndelDB is an integrated database resource containing thousands of previously unreported mouse genomic indel (insertion and deletion) polymorphisms ranging from approximately 100 nt to 10 Kb in size.
  • The database currently includes polymorphisms identified from our alignment of 26 million whole-genome shotgun sequence traces from four laboratory mouse strains mapped against the reference C57BL/6J genome using GMAP.
  • They can be queried on a local level by chromosomal coordinates, nearby gene names or other genomic feature identifiers, or in bulk format using categories including mouse strain(s), class of polymorphism(s) and chromosome number.
  • The results of such queries are presented either as a custom track on the UCSC mouse genome browser or in tabular format.
Keywords:
  • mouse
  • mus musculus
  • insertion polymorphism
  • polymorphism
  • deletion polymorphism
  • indel polymorphism
Literature & Tutorials:
PubMed Link: MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains
This record last updated: 03-02-10
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