Protein domains, classification and phylogeny
Use standard datasets to compare protein classification by different machine learning methods.
Search information on numerical taxonomy of all known structures in the Protein Data Bank (PDB).
Conduct protein classification, expression analysis and SNP function screening.
Search for a wide range of protein data and information through this unified biological database.
Detect orthologs for functional genome analysis.
Resources for structural phylogenomic analysis.
Detect structural and functional domains in protein sequences.
Identify conserved domain in a protein sequence.
Identify conserved domain in a protein sequence.
Comparison of clusters between phylogenetic trees made easy.
A retrieval tool for conserved protein domain architecture.
Explore th hierarchy of protein domain structure.
Automatically identify protein structural domains given the three-dimensional coordinates of a protein.
An accurate protein domain prediction server.
Detect distantly related protein domains.
Analyze phylogenetic trees.
Identify homologous protein domain sequences.
Search for information on functional shift within protein family.
Search and investigate protein motif sequences.
Identify protein family (and DNA) domains, patterns, motifs, protein families, and functional sites.
Search Clusters of Orthologous Groups of protein (COGs) for seven (nearly) complete eukaryotic genomes.
A database of manually constructed structure alignments for duplicated domain pairs.
Search for position-specific scoring matrices for a large number of sequence and structural families of protein domains.
An integrated service dedicated to the analysis of protein sequences.
Search taxonomy data for the complete set of species represented in SWISS-PROT, as well as those stored at the NCBI.
Browse complete genomes in several clades.
A database of orthologous genomic markers for placental mammal phylogenetics.
Search for multiple sequence alignments and phylogenetic trees covering many common protein domains.
Browse and search proteins based on their biological functions.
A program for canonical correlation analysis of multivariate, continuously valued data from biological species.
Calculate maximum likelihood phylogenies from DNA and protein sequences.
A tool to aid high-throughput phylogenetic analysis.
Perform user-friendly pipeline phylogenetic analysis of protein or DNA sequences.
Recognize and classify G-protein coupled receptors (GPCRs) at the family level.
Search for protein fingerprints.
Find information about protein relationships.
A comprehensive database of pattern-recognition receptors and their ligands.
A comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models.
Offers a view of GenBank tailored for molecular phylogenetics.
Phylemon is a web server that integrates a selected suite of more than 20 different tools from the most popular stand-alone programs of phylogenetic and evolutionary analysis.
Use to find information about related traits.
Visualize and analyze the phylogenetic distribution of one or more eukaryotic domains.
Find information about species' metabolic parameters from phylogenetic data.
Use this database to see where in the evolution some phylogenetic lineages were started, and over which species they were contained.
Calculates numerous metrics of phylogenetic community structure and trait similarity within communities.
A web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.
A command line program that performs simple analyses or modifications on both trees and data matrices.
Search and analyze protein domain families.
A tool for the construction of large phylogenetic trees based on profile distances.
Find information about related protein sequences.
Find local structure homology.
Classify proteins using automatic hierarchical clustering of the SWISS-PROT protein database.
Find information about specificities of proteins that bind to RNA.
Search for information on enzyme catalytic domains.
Classify protein binding regions.
Identify putative SH3 domain interaction sites on protein sequences.
Search for pre-computed similarity matrix of protein sequences.
Use this tool to identify and annotate protein domains.
Analyze and compare homologous protein families in a multiple sequence alignment database of either known or unknown structure.
Classify a protein into functional family from its primary sequence.
Identify protein family, domains, patterns, motifs, protein families, and functional sites.
Conduct protein sequence and structure analysis using a suite of software tools.
Predict protein structure and function based on protein sequence.
Search for protein domain sequences, structures, functions,etc.
Partition of the whole protein sequence space by a fully automatic procedure.
Search for curated information of protein families based on Hidden Markov Models.
Visualize structure and phylogeny of protein domains.
Search for phylogenetic mosaicism among one or more DNA or protein sequence multiple alignments and additional unaligned sequences.
A phylogenetic tree capturing tool.
Find information about protein domains in protein function, interaction and evolution.
Search for integrated and comprehensive information on family relationships and structural/functional features of proteins.