RNA structures and functions
To predict conserved secondary structure elements of a family of homologous non-coding RNAs.
Perform multiple sequence alignment of structured RNA.
Use to generate a RNA secondary structure from a sequence.
Perform the pairwise alignment of two RNA 3D structures.
Search for comprehensive information about group II introns.
Search for ribosomal cross-linking data.
Find information about dinucleotide molecular properties.
Predict RNA secondary structures with pseudoknots.
Design RNA sequences that fold into a given pseudo-knot free RNA secondary structure.
Search for information about the experimentally studied IRES (Internal Ribosome Entry Site) segments.
Find information about long RNAs that have no coding potential but are biologically significant. *NOTE* lncRNAdb is currently being migrated to a new home and plans to be online soon.
Perform stochastic folding simulations of nucleic acids.
Predict the secondary structure of RNA and DNA, mainly by using thermodynamic methods.
Predict the stability of nucleic acid secondary structure.
A web server for character coding of geometrical and statistical features in RNA structure.
A database of nucleic acids-protein interactions.
Search for information on functional interactions between noncoding RNAs and proteins in model organisms E. coli, yeast, worm, fly, mouse and human.
Calculate DNA and RNA single-stranded and double-stranded properties, including molecular weight, solution concentration, melting temperature, estimated absorbance coefficients, inter-molecular self-complementarity estimation and intra-molecular hairpin loop formation.
Joint prediction of alignment and common secondary structures of two RNA sequences.
A tool for the construction of large phylogenetic trees based on profile distances.
Visualize any types of RNA pseudoknots and secondary structures.
Predict G-quadruplexes in DNA, RNA and oligo sequences.
Web server for accurately aligning noncoding RNA sequences.
A web server for RNA data analysis and research.
Search for 3D RNA fragments within a set of RNA structures.
Find information about RNA helicases.
A system for the visualization of RNA secondary structure spaces.
Use different tools for the analysis of RNA secondary structure.
Web-based server for analyzing and predicting RNA binding sites in proteins.
Grammar-based compression and informational complexity measurement of RNA secondary structure.
Contains structure and sequence information for RNA structural elements.
Analyze RNA secondary structures.
Create a graphical representation of the patterns in a multiple RNA sequence alignment with a consensus structure.
Search for RNA structural homologs.
An application that provides a user friendly interface for analyzing the effects of point mutations on RNAs secondary structure.
Compute structural neighbors of an RNA secondary structure.
Find information about the effect of point-wise mutations on the structure and function of RNA.
Find information about RNA-RNA interaction.
Predict the secondary structure of a pair of DNA or RNA molecules.
Detect thermodynamically stable and evolutionarily conserved RNA secondary structures in multiple sequence alignments.
Identify both sequence and structure homologs of Regulatory RNA motifs and elements.
Identify RNA riboswitches.
Find information about protein binding pockets that interact with RNA nucleotides.
Search for pair-wise alignment of RNA structures.
Search for information on structural classification of RNA.
Search for information on sequences, structures and functions of the signal recognition particle.
A portal site of web servers and software tools for sequence/structure analysis of non-coding RNAs.
Conduct structural comparison of RNAs and detect common substructures.
Search for comprehensive information on SSU (small subunit) and LSU (large subunit) ribosomal RNA sequences, structures, taxonomy, and literature.
Compare and align two RNA sequences.
Search for information on post-transcriptionally modified nucleosides from RNA.
To search for sequences, alignments, secondary structures and other information on tmRNA.
A comprehensive collection of tools for folding, design and analysis of RNA sequences.
This server utilizes several tools simultaneously to align and predict the common secondary structure of multiple RNA sequences.
Search for information on non-annotated/unannotated non-coding mRNA transcripts.
RNA pseudoknot folding including near-optimal structures and sliding windows.
Web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA.
Search for aligned, annotated and phylogenetically ordered sequences related to structure and function of tmRNA.