CITE-Seq and Spatial Transcriptomics Data Analysis with Partek Flow

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In this workshop, we will cover multiomics data analysis -  CITE Seq and Spatial Transcriptomics. 

Participants will learn how to

  • import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to PartekFlow
  • merge expression data with histological information
  • filter and normalize the data
  • generate PCA, t-SNE, and UMAP plots to visualize data
  • identify cell populations, biomarkers, and compute differential gene expressions between two cell population

Participants are encouraged to work on solving the exercise problems during the hands-on session of the workshop.  

 

Class Type
Molecular Biology