Gene Expression Visualization using PartekFlow and Cytoscape

Upcoming Classes

Gene Expression Visualization using PartekFlow and Cytoscape

Event Details

Instructor: Srilakshmi Chaparala
Time: to
Location: Online, Online - synchronous
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This workshop is on the visualization of gene expression data using HSLS-licensed Partek Flow software as well as open-access Cytoscape software

Participants will learn : 

  • how to import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes
  • generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams
  • how to analyze protein interaction networks and also gene enrichment maps in Cytoscape 

Target Audience:

Experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.

Class Type