This workshop is on the visualization of gene expression data using HSLS-licensed Partek Flow software as well as open-access Cytoscape software
Target Audience:
Experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with the command-line interface is required.
Upon completing this class, you should be able to:
- import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes
- generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams
- analyze protein interaction networks and also gene enrichment maps in Cytoscape