Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow

Upcoming Classes

We have no upcoming HSLS live classes currently scheduled on this topic. Contact us for options.

In this workshop, we will cover multiomics data analysis -  CITE Seq and Spatial Transcriptomics

Participants are encouraged to work on solving the exercise problems during the hands-on session of the workshop.

Upon completing this class, you should be able to:
  • import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to PartekFlow
  • merge expression data with histological information
  • filter and normalize the data
  • generate PCA, t-SNE, and UMAP plots to visualize data
  • identify cell populations, biomarkers, and compute differential gene expressions between two cell population
See more learning options on this topic: Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow