Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - Online

Upcoming Classes

Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - Online

Event Details

Instructor: Ansuman Chattopadhyay, Srilakshmi Chaparala
Date:
Time: to
Location: Online, Online - synchronous
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In this workshop, we will cover the advanced single-cell RNASeq analysis techniques such as CITE Seq and Spatial Transcriptomics. 

Participants will learn how to

  • import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to PartekFlow
  • merge expression data with histological information
  • filter and normalize the data
  • generate PCA, t-SNE, and UMAP plots to visualize data
  • identify cell populations, biomarkers, and compute differential gene expressions between two cell populations

This class listing is for the online version of the workshop, which will be held via Zoom. This workshop will simultaneously be presented in-person at Falk Library; if you would prefer to attend the in-person version of this workshop, please register for Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - In Person

Class Type