Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - Online

Upcoming Classes

Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - Online

Event Details

Instructor: Ansuman Chattopadhyay, Srilakshmi Chaparala
Date:
Time: to
Location: Online, Online - synchronous
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In this workshop, we will cover the advanced single-cell RNASeq analysis techniques such as CITE Seq and Spatial Transcriptomics. 

Participants will learn how to

  • import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to PartekFlow
  • merge expression data with histological information
  • filter and normalize the data
  • generate PCA, t-SNE, and UMAP plots to visualize data
  • identify cell populations, biomarkers, and compute differential gene expressions between two cell populations

 

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