Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - In Person

Upcoming Classes

Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - In Person

Event Details

Instructor: Ansuman Chattopadhyay, Srilakshmi Chaparala
Date:
Time: to
Location: Scaife Hall, Falk Library, Classroom 2
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In this workshop, we will cover the advanced single-cell RNASeq analysis techniques such as CITE Seq and Spatial Transcriptomics. 

Participants will learn how to

  • import 10x Genomics CITE-Seq and Spatial Transcriptomics (Visium) data to PartekFlow
  • merge expression data with histological information
  • filter and normalize the data
  • generate PCA, t-SNE, and UMAP plots to visualize data
  • identify cell populations, biomarkers, and compute differential gene expressions between two cell populations

This class listing is for the in-person version of the workshop, which will be held at Falk Library. This workshop will simultaneously be presented online via Zoom; if you would prefer to attend the online version of this workshop, please register for Spatial Transcriptomics and CITE-Seq Data Analysis with PartekFlow - Online

Class Type