MegaBLAST

URL:
http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=50&ALIGNMENT_VIEW=Tabular&CLIENT=web&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=%28none%29&EXPECT=10&FILTER=L&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&NCBI_GI=on&PAGE=MegaBlast&SERVICE=plain&SET_DEFAULTS.x=34&SET_DEFAULTS.y=8&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes
What you can do:
Compare sequences that differ slightly as a result of sequencing errors.
Highlights:
  • Align nucleotide sequences that differ slightly as a result of sequencing or other similar "errors".
  • Scan a large number of EST type sequences (about 500 kb in length) against large database in search of the closest matches. You can import a file EST sequences in FASTA format or as a list of GenBank accessions or/GIs and have them compared to the BLAST databases.
Keywords:
  • MegaBlast
  • Blast
  • Sequence Alignment tool
  • squencing error detection
  • sequence blast
Literature & Tutorials:
This record last updated: 06-11-2006
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