The TIGR Plant Repeat Databases -- A Collective Resource for the Identification of Repetitive Sequences in Plants
What you can do:
Identify, classify, and analyze repetitive sequences in plant genomes.
Highlights:
- The databases contain repetitive sequences for 12 plant genera: Arabidopsis, Brassica, Glycine, Hordeum, Lotus, Lycopersicon, Medicago, Oryza, Solanum, Sorghum, Triticum and Zea.
- The repetitive sequences within each database have been coded into super-classes, classes and sub-classes based on sequence and structure similarity.
- The repetitive sequences have been combined into four databases to represent the Brassicaceae, Fabaceae, Gramineae and Solanaceae families.
Keywords:
- plant genomes
- plant repetitive sequences
- Arabidopsis repetitive sequences
- Brassica repetitive sequences
- Glycine repetitive sequences
- Hordeum repetitive sequences
- Lotus repetitive sequences
- Lycopersicon repetitive sequences
- Medicago repetitive sequences
- Oryza repetitive sequences
- rice repetitive sequences
- Solanum repetitive sequences
- potato repetitive sequences
- Sorghum repetitive sequences
- Triticum repetitive sequences
- Zea repetitive sequences
- corn repetitive sequences
- Brassicaceae repetitive sequences
- Fabaceae repetitive sequences
- Gramineae repetitive sequences
- Solanaceae repetitive sequences
- comparative genomics
- plant repetitive sequences data warehouse
Literature & Tutorials:
PubMed Link: The TIGR Plant Repeat Databases
This record last updated: 05-10-2005