Find regions suspected of containing coding sequences and visualize nucleotide diversity between two genomic or gene sequences.
Highlights:
The program allows to visualize the x91wobblingx92 in the third codon position of aligned DNA sequences and therefore facilitates the discovery of coding sequences.
CHOP can also isolate highly conserved regions within both coding and non-coding sequences. Highly conserved regions within CDSs include the regions with lower rates of synonymous substitution in which nucleotide sequences are expected to be under strong selective pressure.
