PredictRegulon -- A Web Server for the Prediction of the Regulatory Protein Binding Sites and Operons in Prokaryote Genomes

What you can do:
Predict the potential binding sites and its target operons for a given regulatory protein in prokaryotic genomes.
Highlights:
  • The program allows users to submit known or experimentally determined binding sites of a regulatory protein as ungapped multiple sequence alignments. It analyses the upstream regions of all genes in a user-selected prokaryote genome and returns the potential binding sites along with the downstream co-regulated genes (operons).
  • The known binding sites of a regulatory protein can also be used to identify its orthologue binding sites in phylogeneticaly related genomes where the trans-acting regulator protein and cognate cis-acting DNA sequences could be conserved.
Keywords:
  • DNA-binding sites
  • prokaryotic cis-elements
  • promoter analysis
  • prokaryotic regulatory elements
  • prokaryote genomes
  • prokaryotic transcription factors binding sites
  • prokaryotic transcription factors
  • prokaryotic cis-elements
  • regulon analysis tool
Literature & Tutorials:
PubMed Link: PredictRegulon
This record last updated: 05-09-2005
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