PRODORIC -- Prokaryotic database of gene regulation
What you can do:
Search for curated information on prokaryotic gene expression and regulatory networks.
Highlights:
- PRODORIC is a database that provides annotated information on the regulation of gene expression in prokaryotes.
- It integrates a large compilation of gene regulatory data including transcription factor binding sites, promoter structures and gene expression patterns.
- The whole dataset is manually curated and relies on published results extracted from the scientific literature.
- The current extended version of PRODORIC contains gene regulatory data for several new microorganisms.
- Major improvements were realized in the design of the web interface and the accessibility of the stored information.
- New tools were implemented for the elucidation of gene regulatory interactions.
Keywords:
- prokaryotic genes
- bacteria genes
- pathogenic bacteria
- Pseudomonas aeruginosa
- Escherichia coli K-12
- Bacillus subtilis
- prokaryotic gene regulations
- trans-acting transcription factors
- cis-acting promoter elements
- cis elements
- cis-element
- regulatory elements
- regulatory sequences
- promoter analysis
- promoter structures
- DNA-binding sites
- regulon
- operon
- transcriptional start sites
- translational start sites
- regulator binding sites
- transcription factors
- transcription factor binding sites predictions
- TFs
- regulatory pathways
Literature & Tutorials:
PubMed Link: PRODORIC
-- 2009 Update: PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes
-- 2009 Update: PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes
This record last updated: 04-01-2009