ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human and mouse
What you can do:
View AREs in the human transcriptome and study the comparative genomics of AREs in model organisms.
Highlights:
- ARED Organism represents the expansion of the adenylate uridylate (AU)-rich element (ARE)-containing human mRNA database into the transcriptomes of mouse and rat.
- Quantitative assessment of ARE conservation in human, mouse and rat transcripts was performed, indicating that a significant proportion (approximately 25%) of human genes differ in their ARE patterns from mouse and rat transcripts.
- ARED-Integrated, another updated and expanded version of ARED, is a compilation of ARED versions 1.0 to 3.0 and updated version 4.0 that is devoted to human mRNAs.
Keywords:
- AU-rich element-containing mRNA
- AU-rich elements
- adenylate uridylate-rich elements
- AREs
- ARE alternative forms
- mRNA turnover
- human Adenylate Uridylate Rich Elements
- comparative genomics
- human transcriptome
- mouse transcriptome
- rat transcriptome
Literature & Tutorials:
PubMed Link: ARED 2.0 -- HUMAN AU-RICH ELEMENT-CONTAINING mRNA DATABASE
PubMed Link of 2006 update: ARED 3.0 -- the large and diverse AU-rich transcriptome
2008 Update: ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human and mouse
PubMed Link of 2006 update: ARED 3.0 -- the large and diverse AU-rich transcriptome
2008 Update: ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human and mouse
This record last updated: 03-03-2008